| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 577278 | 266 (0.750) | 19 (0.060) | 9/96 | NT | 7.7% | pseudogene (163/438 nt) | tfaD | pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
| ? | CP009273 | = 1426905 | NA (NA) | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
Only 100 of 471 total aligned reads displayed.
GGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGAT > CP009273/577213‑577345 | gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:28785788/1‑68 (MQ=33)gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:926373/1‑68 (MQ=33)gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:8993286/1‑68 (MQ=33)gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:10169132/1‑68 (MQ=33)gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:25413639/1‑68 (MQ=33)gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:19676227/1‑68 (MQ=33)gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:3808255/1‑68 (MQ=33)gggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:545353/1‑68 (MQ=33)gggACGCGTTATTTATATCTGAACACGGTCCGTTACCGGAAAATTTTACCTGGTTATCGCCGGAAggg > 1:20340711/1‑68 (MQ=11) ggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGATgggg > 1:27933802/1‑68 (MQ=14) ggACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAgggg > 1:13811737/1‑68 (MQ=31) cgcgTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGccacgt < 1:8760440‑M1/68‑7 (MQ=255) cgcgTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGccacgt < 1:7999492‑M1/68‑7 (MQ=255) ttatttCTGACCTCGGCCCGATACCGGAAAATGTACCCTGGTAATCGCCGGAAGccacgtcataaacc < 1:25826630‑M1/68‑15 (MQ=255) tCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGccacgtcataaaccgtttt > 1:17520453‑M1/1‑49 (MQ=255) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt > 1:28420192/1‑67 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:20106231/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:16092443/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:1928501/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:1729977/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:15167278/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:21164884/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:13210001/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:2152524/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:24877940/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:23605898/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:11067359/67‑1 (MQ=31) aCTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGt < 1:22767577/67‑1 (MQ=31) aCTCGGGCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGccacgtcataaaccgttttacccc < 1:4334610‑M1/68‑25 (MQ=255) cGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAg < 1:11874395/68‑1 (MQ=35) gggccGTTACCGGAAAATGTTACCGGGTTATCGCCGGAAGGGGTGTTTCAGAACTGTAACGGTACAGc < 1:327654/65‑1 (MQ=11) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:5190537/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:29249960/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:16781708/68‑1 (MQ=35) ggTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGc < 1:4606636/68‑1 (MQ=35) ccGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTg > 1:27154009/1‑68 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTgg < 1:167264/68‑1 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTgg < 1:601511/68‑1 (MQ=35) cGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTgg < 1:1242838/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:14618593/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:6860127/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:2529232/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:7110938/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:2202360/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:8560770/68‑1 (MQ=35) gTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTggg < 1:9747342/68‑1 (MQ=35) ttACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGACCGGTACAGCCTGGGt > 1:19576494/1‑68 (MQ=25) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:23443146/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:7342423/1‑68 (MQ=35) aCCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGa > 1:19909065/1‑68 (MQ=35) ggAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAg < 1:16452328/68‑1 (MQ=39) aaaTGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGAt < 1:26810511/67‑1 (MQ=40) aaaTGTTACCTGGTTATCGCCCGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATg < 1:5034232/68‑1 (MQ=255) gTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcaga > 1:14058154/1‑68 (MQ=255) ttACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaa > 1:10578549/1‑68 (MQ=255) aCCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagc > 1:8317474/1‑68 (MQ=255) ccTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagca < 1:659269/68‑1 (MQ=255) ccTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagca < 1:3653410/68‑1 (MQ=255) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcag > 1:18859707/1‑68 (MQ=255) cTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcag > 1:7532937/1‑68 (MQ=255) tGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATgcagaagcaga > 1:15788422/1‑68 (MQ=255) gTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaa > 1:18604884/1‑68 (MQ=255) ttATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa > 1:25952752/1‑68 (MQ=255) ttATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa > 1:12944708/1‑68 (MQ=255) ttATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa > 1:1120664/1‑68 (MQ=255) ttATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTCGGTGAAAGATGCAGAAGCAGaaaa > 1:12977673/1‑68 (MQ=255) tATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGaaaa > 1:10207553/1‑67 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:5826410/1‑68 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:20989081/1‑68 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:11614686/1‑68 (MQ=255) gCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt < 1:12699664/68‑1 (MQ=255) ccGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:18399247/1‑67 (MQ=255) ccGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGt > 1:21850212/1‑67 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:27219663‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:20781871‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:26086671‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:7661021‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:23755509‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:14942126‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:24229765‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:4097615‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:26906787‑M1/67‑62 (MQ=255) cGGAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcact < 1:25060749‑M1/67‑62 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:2658390‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:9650143‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:28552763‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:22432703‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:26186939‑M1/68‑64 (MQ=255) ggAAGccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgt < 1:21381837‑M1/68‑64 (MQ=255) aGGGGAGTTTCAGAAGTGGAACGGTACTGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGa < 1:24737998/68‑1 (MQ=255) aGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGa < 1:18143522/68‑1 (MQ=255) ggggAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGAt > 1:10989199/1‑68 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:13612642‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:14734236‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:15411349‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:17579271‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:23092181‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:27393947‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:23989567‑M1/1‑1 (MQ=255) gccacgtcataaaccgttttaccccgatgatcttcaacgagatgccacgatgactcatcactgttgaa > 1:22591758‑M1/1‑1 (MQ=255) | GGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGAT > CP009273/577213‑577345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |