| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 577278 | 266 (0.750) | 19 (0.060) | 9/96 | NT | 7.7% | pseudogene (163/438 nt) | tfaD | pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
| ? | CP009273 | = 1426905 | NA (NA) | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
Only 100 of 312 total aligned reads displayed.
GATGAGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCG > CP009273/1426848‑1426970 | gatgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCa > 1:9509582/1‑67 (MQ=31)gatgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCa > 1:2798271/1‑67 (MQ=31)gatgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCa > 1:25765792/1‑67 (MQ=31)gatgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCa > 1:8133878/1‑67 (MQ=31) tgaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAc > 1:17165029/1‑67 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATGATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:16406957/68‑1 (MQ=25) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc < 1:19387655/68‑1 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgc > 1:8584100/1‑68 (MQ=35) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGGTTATGACGTGGCTTCCGGCAAcgc < 1:7244527/68‑1 (MQ=25) gaGTCATCGTGGCATCTCGTTGAAGATCATCGGGGGAAAACGGGTTATGACGTGGCTTCCGGCAAcgc < 1:25564262/68‑1 (MQ=255) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAAcgcg < 1:27685917/67‑1 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:19894667/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:24823625/1‑68 (MQ=35) gTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGt > 1:10357097/1‑68 (MQ=35) cATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGtta > 1:736331/1‑68 (MQ=35) cATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGtta > 1:21398284/1‑68 (MQ=35) cATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGtt < 1:5775147/67‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:28084463/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:20313512/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:17560279/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:28755917/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:9231858/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:1636353/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:26733763/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:10855481/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:13141193/68‑1 (MQ=35) aTCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGGTTATGACGTGGCTTCCGGCAACGCGttat < 1:15956983/68‑1 (MQ=25) aTCGTGGCATCTCGGTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGttat < 1:7502524/68‑1 (MQ=25) ggCATCTCGTTTAAGATCATCGGGGTAAAACGGATTATGACGTGGCTTCCGGCAACGCGTtatttatt < 1:13801439/68‑1 (MQ=255) ggCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:17809477/1‑68 (MQ=35) gCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:29136777/1‑67 (MQ=35) cATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:18023040/1‑66 (MQ=35) cATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:26581040/1‑66 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:27553578/1‑65 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTtatttatt > 1:21007484/1‑65 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTc < 1:2398417/67‑1 (MQ=35) aTCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTc < 1:22233229/67‑1 (MQ=35) ctcGTTGAAGATCATCGGGGTAAAACGGTTTATGCCGTGGCTTCCGGCAACGCGTTATTTATTTCTGa < 1:5294906/68‑1 (MQ=25) ctcGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGa > 1:5468764/1‑68 (MQ=35) tcGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGaa < 1:8323230/68‑1 (MQ=35) tcGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGa > 1:6760323/1‑67 (MQ=35) tGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCg > 1:18143310/1‑68 (MQ=35) tGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCg < 1:2789166/68‑1 (MQ=35) gAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCgg < 1:4042354/68‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:4673135/67‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:11906721/67‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:15041307/67‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:19788338/67‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:499498/67‑1 (MQ=35) aGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGt < 1:18559839/67‑1 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:22338883/1‑68 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:15511693/1‑68 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:3905541/1‑68 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:24846330/1‑68 (MQ=35) gATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTcc > 1:10192207/1‑68 (MQ=35) catcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGtt < 1:6932135/68‑1 (MQ=35) atcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGtt > 1:22743317/1‑67 (MQ=35) atcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGtt > 1:13987689/1‑67 (MQ=35) atcGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGtt > 1:1135905/1‑67 (MQ=35) ggggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCg > 1:23428053/1‑68 (MQ=35) ggggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCg < 1:26071918/68‑1 (MQ=35) ggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCgg < 1:20238052/67‑1 (MQ=35) ggTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGa > 1:3321067/1‑68 (MQ=35) gTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaa > 1:237789/1‑68 (MQ=35) ataaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGaaaa < 1:7856451/66‑1 (MQ=25) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:16608811/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:17481849/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:19031347/68‑1 (MQ=35) aaaCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAAt < 1:22467305/68‑1 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:9860035/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:4490271/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt < 1:4466566/68‑1 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:292254/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:2529202/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:21266045/1‑68 (MQ=35) aCGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGt > 1:26961050/1‑68 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGtt > 1:26212229/1‑67 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGtt > 1:20413779/1‑67 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGtt > 1:6309256/1‑67 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGtt > 1:17942335/1‑67 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa < 1:27390712/68‑1 (MQ=35) ggTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTATGAACTCGGTCCGTTACCGGAAAATGTTa < 1:11674921/68‑1 (MQ=255) tttATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTa > 1:6581557/1‑66 (MQ=35) ttATGACTTGTCTTCCTGCAACGCGTTATTTATTTGTTAACTCGTTCAGTTACCGGAAAATTTTTcc < 1:14418429/67‑1 (MQ=2) tATGAGGTGGCATCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTg < 1:24354224/68‑1 (MQ=255) tGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGt < 1:9277517/68‑1 (MQ=35) tGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGt < 1:10028725/68‑1 (MQ=35) tGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGt < 1:15600444/68‑1 (MQ=35) tGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGt < 1:12903503/68‑1 (MQ=35) gACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGtt > 1:20019112/1‑68 (MQ=35) gACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGtt > 1:12675018/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:10253907/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:10734438/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:16084861/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:12273591/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:6841244/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:18438212/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:28852330/1‑68 (MQ=35) aCGTGGCTTCCGGCAACGCGATATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTa > 1:21173398/1‑68 (MQ=25) ggCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCg < 1:12518249/67‑1 (MQ=35) | GATGAGTCATCGTGGCATCTCGTTGAAGATCATCGGGGTAAAACGGTTTATGACGTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCG > CP009273/1426848‑1426970 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |