| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 831686 | NA (NA) | 3 (0.010) | 3/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 120 total aligned reads displayed.
ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/831610‑831686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatgaCATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATA < CP009273/831692‑831627 ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA < 1:9713842/68‑1ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA < 1:10592790/68‑1ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA > 1:10644230/1‑68ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA < 1:22449338/68‑1ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA > 1:856071/1‑68 CGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAG < 1:28335671/68‑1 CGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA > 1:17983155/1‑67 GGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGC < 1:12856900/68‑1 GGTGAGGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATACTTTTCTCAGCC > 1:6369841/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:29231494/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:1907357/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:27237786/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:8261112/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:1886769/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG > 1:5767905/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG > 1:3080499/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG > 1:5248099/1‑68 TGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG > 1:13264568/1‑68 TGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG < 1:2787379/67‑1 GAAGCTTCAACTATCAGAGACGGACTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:519105/68‑1 GAAGCGTCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:23082977/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:4112968/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:11978190/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:14524708/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:1504896/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:8728439/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:19167907/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:25200389/67‑1 AGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATG > 1:21579837/1‑68 GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:22697515/1‑68 CGGCAACTATCAGCGCCGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:22058718/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTGATTCTTTTCTCAGCCGGATGA > 1:5168166/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:19377321/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:26835080/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:26648331/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:25421778/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:208898/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:4833991/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:7252885/1‑67 GGCAACTATCCGCGAATGCCTGGCGCTCGTTAATCAGGCATTTTAATTCTTATCTCAGCCGGATGA < 1:16214673/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:26225380/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:9704395/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:11537344/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:9130426/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:26859244/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:13081169/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:27472543/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:3096809/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:4263423/66‑1 TCAGGCATTTTAATTCTTTTCTCAGCCGGATGACATGGCTGATCCGGCTGAGATAAGAATTAAAATG > 1:21584422/1‑67 CAGGCATTTTAATTCTTTTCTCAGCCGGAGGCCATGGCTCGTCCGGCTGAGAAAAGAATTAAAATGCg > 1:6065731/1‑67 CATTTTAATTCTTTTCTCAGCCGGATGCCATGGCTCCTCCGGCTGAGAAAAGAATTTAAATGGCTGAT > 1:9049837/1‑68 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTACCGCGCGCCAGGCCG > 1:17549764/1‑67 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:28227250/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:8350946/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:25070435/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:4811782/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:3680500/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:26197002/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:15609114/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:8951531/1‑67 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:6940476/1‑67 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:22275589/1‑67 GCCGGATGCCATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:15155413/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAATATGCCTGTTTAACGCGCGCCAGGCCGTC > 1:14021865/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAACTGCCTGATTAACGAGCGGCAGGCCGTC > 1:20800065/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:10333436/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:15600353/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:17140899/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:17226680/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:18898760/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:20091581/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:4618070/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:2567407/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:26849548/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:25105951/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGAGCGCCAGGCCGTC > 1:432860/1‑68 CCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:10233488/1‑67 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:26218547/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:6225423/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:22932996/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:19674834/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:12081795/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:25798735/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:20757512/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:21802514/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:6850958/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:11705664/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:3247414/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:7988486/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:13074855/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:10813952/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC < 1:24654111/66‑1 GGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCT < 1:15650308/68‑1 TGACATGGCTCATCCGGCTGAGAAAATAATTAAAATGCCTTATTAACGCGCGCCAGGCCGTCGCTGA < 1:23422808/67‑1 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGAT > 1:23952330/1‑68 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGAT > 1:21638208/1‑68 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA < 1:21748738/67‑1 GACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATA > 1:25290236/1‑68 GACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATA > 1:2271739/1‑68 ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/831610‑831686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatgaCATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATA < CP009273/831692‑831627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |