| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 831686 | NA (NA) | 3 (0.010) | 3/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 391 total aligned reads displayed.
GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACG > CP009273/831619‑831752 | gCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:22697515‑M1/1‑68 (MQ=255) cGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:7252885‑M1/1‑67 (MQ=255) cGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:19377321‑M1/1‑67 (MQ=255) cGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:26648331‑M1/1‑67 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAg < 1:17468129/67‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAg < 1:27597868/67‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAg < 1:24542860/67‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAg < 1:23961499/67‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAg < 1:1843369/67‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAg < 1:26226333/67‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGc < 1:3569221/68‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGc < 1:15380670/68‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGc < 1:20537009/68‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGc < 1:7049158/68‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGc < 1:13598226/68‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:3096809‑M1/66‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:13081169‑M1/66‑1 (MQ=255) ggCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:22931159‑M1/66‑1 (MQ=255) aaCTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTATTTTCTCAGCCGGATGAGCCAt < 1:13006879/68‑1 (MQ=255) gCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGgcatccg < 1:27277885‑M2/68‑8 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:6850958‑M2/67‑8 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:22048391‑M2/67‑8 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:21802514‑M2/67‑8 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:11705664‑M2/67‑8 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:25798735‑M2/67‑8 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:12081795‑M2/67‑8 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:4618070‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:20091581‑M2/1‑59 (MQ=255) aCGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct < 1:15609114‑M2/68‑11 (MQ=255) aCGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct < 1:26197002‑M2/68‑11 (MQ=255) ccTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCtttt > 1:26954611/1‑67 (MQ=255) ccTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCtttt < 1:8288000/67‑1 (MQ=255) ccTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCtttt < 1:14260820/67‑1 (MQ=255) tGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcc < 1:11990956/68‑1 (MQ=255) gcgcgcGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcccc > 1:5522081/1‑68 (MQ=255) cgcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcccc > 1:17065494/1‑67 (MQ=255) cgcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcccc > 1:25616860/1‑67 (MQ=255) gcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCa > 1:10646370/1‑67 (MQ=255) gcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAc < 1:421205/68‑1 (MQ=255) gcgcgTTAATCAGGCATTTTAATTCTTTTCGCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCa > 1:6443462/1‑67 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:4550566/67‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:25494658/67‑1 (MQ=255) gTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGc < 1:10008992/67‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:13303466/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:23585858/68‑1 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCTGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatat < 1:3702348/68‑1 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatat < 1:4010362/68‑1 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatat < 1:7942283/68‑1 (MQ=255) cAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGa > 1:584300/1‑68 (MQ=255) cAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGa > 1:8013611/1‑68 (MQ=255) cgcATTTTAATTCTTTTCTCAGCCGGACGAGCCATGgcctccggctgagaaaagaattaaaatgcctg > 1:6065731‑M2/2‑36 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGaa < 1:11532750/65‑1 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGaa < 1:17254646/65‑1 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAt > 1:15783094/1‑67 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAt > 1:14448905/1‑67 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAt > 1:21476124/1‑67 (MQ=255) cATTTTAATTCTTATCTCAGCCGGATCAGCCATGtcatccggctgagaaaagaattaaaatgcctga > 1:21584422‑M2/1‑34 (MQ=255) aaTTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCa < 1:25273931/68‑1 (MQ=255) ttCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATc < 1:915364/68‑1 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:3276252/1‑68 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:17180150/1‑68 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:10456080/1‑68 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:1084542/1‑68 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:18948288/1‑68 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:13182083/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:23404349/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:18001532/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:9530422/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:4742736/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCCCCGCAATATGAAATTCCTGCATCttt < 1:27909556/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:8766717/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:96984/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:17813278/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:21087514/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:25422599/68‑1 (MQ=255) tcAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTg > 1:361377/1‑67 (MQ=255) tcAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTg > 1:9066728/1‑67 (MQ=255) tcAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGa < 1:5131457/68‑1 (MQ=255) cAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGAc < 1:16213379/68‑1 (MQ=255) aGCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgt < 1:4811782‑M1/68‑59 (MQ=255) aGCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgt < 1:28227250‑M1/68‑59 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaatatgcctgtttaacgcgcgccaggccgtc > 1:14021865‑M1/1‑9 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaaactgcctgattaacgagcggcaggccgtc > 1:20800065‑M1/1‑9 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtc > 1:25105951‑M1/1‑9 (MQ=255) gCCGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtc > 1:10333436‑M1/1‑9 (MQ=255) gCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCt > 1:22952317/1‑68 (MQ=255) gCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCt > 1:22468319/1‑68 (MQ=255) gCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCt > 1:29118108/1‑68 (MQ=255) ccGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtc > 1:10233488‑M1/1‑8 (MQ=255) cGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcgc < 1:6225423‑M1/68‑62 (MQ=255) cGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcg < 1:19674834‑M1/67‑61 (MQ=255) cGGATGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcg < 1:1495769‑M1/67‑61 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGAcc < 1:9003911/65‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:28525897/68‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:8442947/68‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:12463366/68‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:26840551/68‑1 (MQ=255) tGAcatggctcatccggctgagaaaagaattaaaatgcctgattaacgcgcgccaggccgtcgctga < 1:21748738‑M1/67‑65 (MQ=255) tGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCa < 1:24830002/67‑1 (MQ=255) gAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACg < 1:18705752/68‑1 (MQ=255) | GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACG > CP009273/831619‑831752 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |