| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 831686 | NA (NA) | 3 (0.010) | 3/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 313 total aligned reads displayed.
ACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCGGCG > CP009273/831625‑831759 | aCTATCAGCGACGGCCTCGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATg > 1:3305355/1‑68 (MQ=255) aTCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtca > 1:21638208‑M2/1‑65 (MQ=255) tCAGCGACGGCCTGGCGCGCGTTAATAAGGCATTTTAATTATTTTCTCAGCCGGATGAGCCATGtca < 1:23422808‑M2/67‑4 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:11705664‑M2/67‑8 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:12081795‑M2/67‑8 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:15600353‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:4168424‑M2/1‑59 (MQ=255) aCGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct < 1:18092986‑M2/68‑11 (MQ=255) aCGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct < 1:25070435‑M2/68‑11 (MQ=255) cGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct > 1:6940476‑M2/1‑57 (MQ=255) cGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct > 1:22275589‑M2/1‑57 (MQ=255) cGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCtt < 1:21960542/68‑1 (MQ=255) cGGCCTGGCGCGCGGTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct > 1:17549764‑M2/1‑57 (MQ=255) ccTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCtttt > 1:11025027/1‑67 (MQ=255) ccTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCtttt < 1:8288000/67‑1 (MQ=255) ccTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCAAGTCATCCGGCtttt > 1:13277340/1‑67 (MQ=255) tGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcc < 1:11990956/68‑1 (MQ=255) ggCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcc > 1:1345413/1‑67 (MQ=255) gcgcgcGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcccc > 1:27819389/1‑68 (MQ=255) cgcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcccc > 1:17065494/1‑67 (MQ=255) cgcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTAcccc > 1:25616860/1‑67 (MQ=255) gcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCa > 1:10646370/1‑67 (MQ=255) gcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAc < 1:22557973/68‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:14611896/67‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:23354304/67‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:24709940/67‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:25494658/67‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:4550566/67‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:18908573/67‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:27062123/67‑1 (MQ=255) gTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGc < 1:10008992/67‑1 (MQ=255) tAATCAGGGATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:17219731/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCaa < 1:358655/67‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:669493/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:28039768/68‑1 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatat < 1:6362932/68‑1 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatat > 1:26228571/1‑68 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatat < 1:4010362/68‑1 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatat < 1:7942283/68‑1 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatat < 1:28581776/68‑1 (MQ=255) tCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATg > 1:12977823/1‑68 (MQ=255) cAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGa > 1:4799177/1‑68 (MQ=255) cAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGa > 1:8013611/1‑68 (MQ=255) ggCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGaaa > 1:7365849/1‑68 (MQ=255) cgcATTTTAATTCTTTTCTCAGCCGGACGAGCCATGgcctccggctgagaaaagaattaaaatgcctg > 1:6065731‑M2/2‑36 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAt > 1:17909068/1‑67 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAt > 1:10397554/1‑67 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAt > 1:8138533/1‑67 (MQ=255) cATTTAAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGaa < 1:13954334/65‑1 (MQ=255) tAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGc > 1:26600693/1‑68 (MQ=255) aaTTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCa < 1:17383048/68‑1 (MQ=255) aTTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCa > 1:21757967/1‑67 (MQ=255) ttCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATc < 1:915364/68‑1 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:25158554/1‑68 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:13182083/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:366976/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:8672973/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:951276/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:4742736/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:8766717/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:28434550/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:10306286/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:18998936/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:19971735/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:16128514/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:20764567/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:21087514/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:21522277/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:15675957/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:24352927/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:25422599/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:26168398/68‑1 (MQ=255) tcAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTg > 1:9066728/1‑67 (MQ=255) tcAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGa < 1:20399574/68‑1 (MQ=255) tcAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGa < 1:5131457/68‑1 (MQ=255) tcAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGa < 1:16245286/68‑1 (MQ=255) tcAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCACCTTTATTGa < 1:5598020/68‑1 (MQ=255) gCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCt > 1:14181438/1‑68 (MQ=255) gCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCt > 1:22952317/1‑68 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGAcc < 1:9003911/65‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGAcc < 1:5868608/65‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCt < 1:3755925/66‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:9669713/68‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:26840551/68‑1 (MQ=255) ggATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTcc < 1:27336702/68‑1 (MQ=255) tGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCAc > 1:23851761/1‑68 (MQ=255) gAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACg < 1:18705752/68‑1 (MQ=255) aGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACg > 1:14376116/1‑67 (MQ=255) ccATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGccc > 1:12236854/1‑68 (MQ=255) ccATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGccc > 1:10882993/1‑68 (MQ=255) ccATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGccc > 1:10485495/1‑68 (MQ=255) cATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGccc < 1:3223424/67‑1 (MQ=255) cATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGc > 1:25737287/1‑65 (MQ=255) aTGTTATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCgg < 1:5403346/68‑1 (MQ=255) aTGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCgg < 1:12664118/68‑1 (MQ=255) tGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCGGc < 1:14931805/68‑1 (MQ=255) gTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCGGCg > 1:19423357/1‑68 (MQ=255) gTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCGGCg > 1:4651474/1‑68 (MQ=255) gTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCGGCg > 1:22729526/1‑68 (MQ=255) gTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCGGCg > 1:293162/1‑68 (MQ=255) | ACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCGGCG > CP009273/831625‑831759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |