New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1171843291 (0.820)16 (0.050)
+G		 5/110 NT 5.8% coding (961/1200 nt) lolC lipoprotein‑releasing system transmembrane protein
?CP009273 = 1171944 238 (0.670)coding (1062/1200 nt) lolC lipoprotein‑releasing system transmembrane protein

CTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1171799‑1171843
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGC  <  CP009273/1171944‑1171887
                                             |                                                          
CTCCGCGCCAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCCGGGCCAGCCAGCAGGACGCCG                                      >  1:21311767/1‑68
                 ATGGTCTTTATGGTGCAAGGGGCCAGCGGCGCGCCATCAAGCAGGGCGCCGATTATCGGCATCAGATT                     >  1:12576364/1‑68
                   GGTCTTTATGGTGCAAGGGGCCAGCGGCGCGGCATCAAGCAGGACGCCGATTATCGGCAGCAGAGTAT                   >  1:10983414/1‑68
                           TGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATAATTTAACTG            >  1:9510112/1‑67
                           TGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTAGCGGCATCAGATTATTTAACTG            >  1:18666379/1‑67
                            GGTGCAAGGGGCCAGCGCCGCGCCATCCAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGC          >  1:7368698/1‑68
                            GGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTG            >  1:28268985/1‑66
                            GGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTG            >  1:4358543/1‑66
                               GCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGGTTTTCGGCATCAGATTATTTAACTGGCgg        >  1:20756038/1‑65
                                    GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAcc  >  1:17993839/1‑66
                                    GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGC  >  1:13514366/1‑68
                                    GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGC  >  1:17633134/1‑68
                                    GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGC  >  1:869724/1‑68
                                    GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAG   >  1:15108293/1‑67
                                    GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAG   >  1:19692059/1‑67
                                    GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATGATCGGCATCAGATTATTTAACTGGCTGGCAAGC  >  1:4044487/1‑68
                                             |                                                          
CTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1171799‑1171843
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGC  <  CP009273/1171944‑1171887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.