| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2732272 = | NA (NA) | 5 (0.020) | 4/88 | NT | NA | intergenic (+8/+35) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase |
| ? | CP009273 | 2732300 = | NA (NA) | intergenic (+36/+7) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase | |||||
Only 100 of 149 total aligned reads displayed.
AAGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2732349‑2732272‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcatccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGC > CP009273/2732300‑2732364 AAGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACA < 1:9049900/67‑1 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:10389541/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:14543431/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:11177820/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:3341363/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:19411212/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:6924722/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:13339234/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC > 1:17832832/1‑68 AGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATC < 1:627629/68‑1 AGCCGCGTGTTATTGCGTCAGGAGAATGACAATAGCCAGTAATAATCCATTGCCGGATGATTAACATC > 1:292767/1‑68 GCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCA > 1:66887/1‑68 GCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCA > 1:2074527/1‑68 GCCGCGTCTTATTGCGTCAGGCGATTGACAATCGCCAGTAATAATCCAGAGCCGGATGATTAACATat > 1:16058230/1‑66 CCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCA > 1:13115700/1‑67 CCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCA > 1:25238259/1‑67 CCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCA > 1:4373769/1‑67 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATC < 1:22224911/68‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATC < 1:24815186/68‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:4804368/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:3394934/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:2284626/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:3134150/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:2425746/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:24925845/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:26241301/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:25746025/67‑1 CGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAT < 1:25722734/67‑1 CGCGTGTTAATGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCAc < 1:7018620/67‑2 CGCGGGTTATTGCGTCAGGCGAATGCCAATCGCCAGTAATAATCCAGGGCCGGATGATTCACATCAT < 1:474226/67‑1 GCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCC > 1:12444303/1‑68 TGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGC > 1:1906450/1‑68 GTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGCA < 1:11784709/68‑1 GTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGC > 1:19794804/1‑67 GTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGC < 1:13438203/67‑1 GTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGC > 1:23307351/1‑67 TTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGCACTGG < 1:28039527/68‑1 TTGAGTCAGGCGAATTACAATCTCCAGTAATAATCCAGGTCCGGATGATTCACATCATCCGGCACTGG < 1:5318421/68‑1 GTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGCACTGGATTA < 1:9446316/68‑1 CAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGCACTGGATTATT < 1:18923327/68‑1 ATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGCACTGGATTATTACTGGC < 1:11587521/67‑1 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACT < 1:26266133/67‑1 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACT < 1:9817421/67‑1 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACT < 1:17842763/67‑1 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:4425667/1‑66 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:4234174/1‑66 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:17914702/1‑66 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:24598525/1‑66 ATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:18883959/1‑66 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCT < 1:702133/68‑1 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCT < 1:865268/68‑1 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:8590326/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:647142/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:23069253/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:23264907/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:17054247/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:19132852/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAC > 1:16345175/1‑65 TCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTAAC > 1:10394705/1‑65 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:16320725/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:3466977/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:3671506/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:14073365/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:3049649/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:1231724/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:17769160/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:27546353/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:23079546/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:17784835/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:2070271/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:24250429/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:19629893/68‑1 CATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTG < 1:20314880/68‑1 CATCCGGAACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTt < 1:7894585/68‑2 ATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGA > 1:7762383/1‑68 ATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGA < 1:5710695/68‑1 TCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAA < 1:21264796/68‑1 CCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAA > 1:24657307/1‑68 CCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAA > 1:25235909/1‑68 CCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAA > 1:7689360/1‑68 CCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAA > 1:18082977/1‑68 CCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAA > 1:23115064/1‑68 CCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAA > 1:7857809/1‑68 CCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAA > 1:11823383/1‑68 CACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACG < 1:17491789/67‑1 CACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:15133391/1‑66 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGC < 1:10140153/67‑1 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGC < 1:13268712/67‑1 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGC < 1:15140202/67‑1 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGC < 1:27040424/67‑1 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:11704571/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:15268209/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:3983160/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:2928300/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:27813151/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:23293137/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:11224468/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:21546683/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:959068/1‑65 ACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAC > 1:21668080/1‑65 AAGCCGCGTGTTATTGCGTCAGGCGAATGACAATCGCCAGTAATAATCCAGTGCCGGATGATTCACATCATCCGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2732349‑2732272‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcatccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGC > CP009273/2732300‑2732364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |