| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2732272 = | NA (NA) | 5 (0.020) | 4/88 | NT | NA | intergenic (+8/+35) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase |
| ? | CP009273 | 2732300 = | NA (NA) | intergenic (+36/+7) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase | |||||
Only 100 of 518 total aligned reads displayed.
TGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCTGT > CP009273/2732234‑2732367 | tcagaACGTAGTGCCTGTTGATCAAACATGATGAAAAGGTCCCGGATGAAGTGAAACAACCGGCACTg > 1:8964240/3‑68 (MQ=255)tGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg > 1:10013673/1‑68 (MQ=255)tGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg > 1:22022724/1‑68 (MQ=255)tGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg > 1:4460807/1‑68 (MQ=255) gagcACGTAGGGCCTGTTGATCCAACCTGATGAAAAGGGGCCGGATGATGTGAATCATCCGGCACTgg < 1:23842196/68‑1 (MQ=255) gagaTCGTAGTGCCTTTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:12768282/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:23036623/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:17155441/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:24863604/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:25171628/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg < 1:25372760/67‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCCGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:5445384/68‑1 (MQ=255) gtaCGTAGTGCCTGTTGATACAACCTGATTAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:10652190/65‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGGAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:26594575/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:2064790/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:18672634/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:6228191/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:5005232/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:17403336/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:27973973/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:11600380/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:12474737/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:26423423/67‑1 (MQ=255) gtcaggcgaatgacaatcgccagtaataatccagtgccggatgattcacatcatccggcacTGGatta < 1:9446316‑M2/7‑1 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:28876818/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:11753342/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:20815383/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:3882624/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:26020403/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:26111505/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:9271495/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:22337056/1‑68 (MQ=255) cGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattat > 1:15250229/1‑68 (MQ=255) cGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattat > 1:14380933/1‑68 (MQ=255) gTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattatt > 1:19861994/1‑68 (MQ=255) gTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattatt < 1:4062255/68‑1 (MQ=255) tAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattatt > 1:21478036/1‑67 (MQ=255) tAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattatt > 1:27614945/1‑67 (MQ=255) tAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattatt > 1:20291296/1‑67 (MQ=255) gTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattatt > 1:19562123/1‑65 (MQ=255) ccTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGc > 1:28150245/1‑68 (MQ=255) ccTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGc > 1:28573951/1‑68 (MQ=255) ccTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGc > 1:18069007/1‑68 (MQ=255) cTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGc < 1:7465807/67‑1 (MQ=255) tGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGa > 1:18364641/1‑68 (MQ=255) gTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGAt < 1:5738469/68‑1 (MQ=255) ttGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGAtt > 1:18965924/1‑68 (MQ=255) tCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCa > 1:19698905/1‑68 (MQ=255) tCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCa > 1:16758182/1‑68 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:19315435/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:13054340/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:6660859/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGc < 1:24622563/68‑1 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCCGCACAGGATTATTACTGGCGATTGTCATTCg > 1:11344697/1‑67 (MQ=255) aataatccaGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTg < 1:18923327‑M1/59‑1 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:16167014/68‑1 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:14782459/68‑1 (MQ=255) aaaGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCa < 1:11852486/68‑1 (MQ=255) aaaGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCa < 1:15677107/68‑1 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt > 1:4782504/1‑68 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt > 1:11176447/1‑68 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt < 1:12204383/68‑1 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt < 1:13585922/68‑1 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt < 1:15056871/68‑1 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt > 1:8359064/1‑68 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt > 1:4318634/1‑68 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt < 1:17694211/68‑1 (MQ=255) ggTGCCGGATGATGTGAATCATACGGCACTGGATTATTACTTGCGATTGTCATTCGCCATACGCAATa > 1:11453222/1‑68 (MQ=255) GATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACAcgcg < 1:22816233‑M1/68‑1 (MQ=255) gTGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCATTAACAcgcg < 1:7018620‑M1/66‑1 (MQ=255) ATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACAcgcg < 1:3047903‑M1/67‑1 (MQ=255) GATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCt > 1:10389541‑M1/1‑68 (MQ=255) gtgAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTc > 1:8514656/1‑68 (MQ=255) tgAATCATCCGGCACTGGAGTATTACTGGCCATTGTCATTCGCCAGCCCCAATAACACGCGGCTTTc > 1:16546739/1‑67 (MQ=255) atcatccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAc > 1:16990245‑M2/13‑66 (MQ=255) atcatccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCATTCAc > 1:3151316‑M2/13‑66 (MQ=255) tcatccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAc > 1:23264907‑M2/12‑65 (MQ=255) tcatccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAc > 1:19132852‑M2/12‑65 (MQ=255) tcatccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAc > 1:1788007‑M2/12‑65 (MQ=255) tcatccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCAc > 1:647142‑M2/12‑65 (MQ=255) catccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTg < 1:27546353‑M2/58‑1 (MQ=255) catccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTg < 1:3466977‑M2/58‑1 (MQ=255) catccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTg < 1:25550769‑M2/58‑1 (MQ=255) catccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTg < 1:24250429‑M2/58‑1 (MQ=255) catccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTg < 1:16320725‑M2/58‑1 (MQ=255) catccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTg < 1:17784835‑M2/58‑1 (MQ=255) catccggaacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCactctt < 1:7894585‑M2/58‑2 (MQ=255) atccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGa > 1:7762383‑M2/10‑68 (MQ=255) ccggcacTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGaaa > 1:23115064‑M2/8‑68 (MQ=255) acTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACAGGCGGCTTTCACTCTGAAAAc > 1:25007200‑M2/3‑65 (MQ=255) acTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAc > 1:959068‑M2/3‑65 (MQ=255) acTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAc > 1:21668080‑M2/3‑65 (MQ=255) acTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAAc > 1:23529137‑M2/3‑65 (MQ=255) acTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGc < 1:13268712‑M2/65‑1 (MQ=255) acTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGc < 1:27040424‑M2/65‑1 (MQ=255) tGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCtgt < 1:8045906/68‑1 (MQ=255) tGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCtgt < 1:8744409/68‑1 (MQ=255) tGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCtgt < 1:14007832/68‑1 (MQ=255) tGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCtgt < 1:13336761/68‑1 (MQ=255) tGGATTATTACTGGCGACTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCtgt < 1:6870096/68‑1 (MQ=255) | TGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATAACACGCGGCTTTCACTCTGAAAACGCTGT > CP009273/2732234‑2732367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |