| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2732272 = | NA (NA) | 5 (0.020) | 4/88 | NT | NA | intergenic (+8/+35) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase |
| ? | CP009273 | 2732300 = | NA (NA) | intergenic (+36/+7) | pheA/tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase | |||||
Only 100 of 644 total aligned reads displayed.
TCAATGAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATA > CP009273/2732205‑2732338 | cAATGAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGt < 1:9162885/68‑1 (MQ=255) cAATGAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGt < 1:20927040/68‑1 (MQ=255) gttttcagagtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGt > 1:27813151‑M1/64‑65 (MQ=255) gttttcagagtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGt > 1:21668080‑M1/64‑65 (MQ=255) gAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCg > 1:2307100/1‑68 (MQ=255) gAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCg > 1:17684457/1‑68 (MQ=255) gAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCg > 1:23741368/1‑68 (MQ=255) gAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCg > 1:16045025/1‑68 (MQ=255) gAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCg > 1:22534579/1‑68 (MQ=255) gAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCg > 1:15065402/1‑68 (MQ=255) gAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCg < 1:20215193/68‑1 (MQ=255) gAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCg > 1:10489895/1‑68 (MQ=255) tttcagagtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCgg > 1:25235909‑M1/62‑68 (MQ=255) aaGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCgg > 1:8223412/1‑68 (MQ=255) cagagtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCGgatg < 1:19629893‑M1/10‑1 (MQ=255) aTTGGGCTGTTACCCAAGTTAGAACGTTGTGCCTGTTGATCCATCCTGATGAAAAGGTGCCGgatga < 1:1221342/67‑1 (MQ=255) aTTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgatgat < 1:25870060/68‑1 (MQ=255) aTTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgatga < 1:23467133/67‑1 (MQ=255) aTTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgatga < 1:21476925/67‑1 (MQ=255) aTTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgatga < 1:3112848/67‑1 (MQ=255) aTTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgatga < 1:14890040/67‑1 (MQ=255) aTTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGgatga < 1:7382609/67‑1 (MQ=255) tGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGAtgt < 1:24494026/68‑1 (MQ=255) gtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCGgatgat > 1:3715207‑M1/55‑66 (MQ=255) gtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCGgatga > 1:8590326‑M1/55‑65 (MQ=255) gtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCGgatga > 1:1788007‑M1/55‑65 (MQ=255) gtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCGgatga > 1:17054247‑M1/55‑65 (MQ=255) gtgaaagccgcgtgttattgcgtcaggcgaatgacaatcgccagtaataatccaGTGCCGgatga > 1:13089365‑M1/55‑65 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:27054825/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:6769576/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:29252022/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:19288206/1‑68 (MQ=255) gCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGaa > 1:18061281/1‑68 (MQ=255) tACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAACGGTGCCGGATGATGTGAatcat < 1:2856096/67‑1 (MQ=255) ctaGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc < 1:780060/66‑1 (MQ=255) cAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc < 1:3449380/68‑1 (MQ=255) aaGTGAGAACGTAGTGCCTGTTGATCCCACCGGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc > 1:13575603/1‑67 (MQ=255) aaGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc > 1:9574696/1‑67 (MQ=255) aaGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc > 1:28730341/1‑67 (MQ=255) aaGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc > 1:4039789/1‑67 (MQ=255) aaGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc > 1:10003259/1‑67 (MQ=255) aaGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc > 1:13942303/1‑67 (MQ=255) aaGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATAATCCGGc > 1:12835495/1‑67 (MQ=255) aGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGc > 1:20008119/1‑66 (MQ=255) tGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg > 1:16632903/1‑68 (MQ=255) tGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg > 1:23162418/1‑68 (MQ=255) tGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg > 1:4460807/1‑68 (MQ=255) tGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTg > 1:695675/1‑68 (MQ=255) gagaATGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:4282968/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:18730237/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:22891206/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:11580158/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:27436981/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:17770633/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:14221951/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:24863604/68‑1 (MQ=255) gagaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTgg < 1:17155441/68‑1 (MQ=255) gaACGTCGGGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCCTCCGGCACTGGa < 1:24200557/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:16821989/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:25547237/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:6228191/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:26504008/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:12477251/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:8406134/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:10272928/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:14655842/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCAGCATGATGTGAATCATCCGGCACTGGa < 1:5049236/67‑1 (MQ=255) gaACGTAGTGCCTGTTGATCCAACCTGAGGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGa < 1:19373485/67‑1 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:19703602/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:5495555/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta < 1:12034444/68‑1 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:10788157/1‑68 (MQ=255) aCGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGatta > 1:26111505/1‑68 (MQ=255) cGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattat < 1:22084652/68‑1 (MQ=255) cGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGattat > 1:15250229/1‑68 (MQ=255) aGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTAc < 1:1911023/68‑1 (MQ=255) gCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTg > 1:20708145/1‑67 (MQ=255) ccTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGc > 1:28150245/1‑68 (MQ=255) ccTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGc > 1:3979161/1‑68 (MQ=255) tGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGa > 1:18364641/1‑68 (MQ=255) gTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGAt < 1:9466216/68‑1 (MQ=255) cAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCAt > 1:2667255/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:17369367/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:7917187/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:21957869/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCg > 1:1172513/1‑67 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGc < 1:7534238/68‑1 (MQ=255) ccTGATGAAAAGGTGCCGGATGATGTGAATCATCCCGCACAGGATTATTACTGGCGATTGTCATTCg > 1:11344697/1‑67 (MQ=255) aataatccaGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTg < 1:18923327‑M1/59‑1 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:8744910/68‑1 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:2045742/68‑1 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc > 1:6424818/1‑68 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:5743316/68‑1 (MQ=255) tgaAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGAc < 1:27567776/68‑1 (MQ=255) aaaGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCa < 1:16241107/68‑1 (MQ=255) aaaGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCa < 1:15677107/68‑1 (MQ=255) ccaGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCaa < 1:13274147‑M1/65‑1 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt > 1:25031599/1‑68 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt > 1:4782504/1‑68 (MQ=255) aGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAAt > 1:11142430/1‑68 (MQ=255) | TCAATGAAGGTATTGGGCTGTTACCCAAGTGAGAACGTAGTGCCTGTTGATCCAACCTGATGAAAAGGTGCCGGATGATGTGAATCATCCGGCACTGGATTATTACTGGCGATTGTCATTCGCCTGACGCAATA > CP009273/2732205‑2732338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |