| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2787501 | NA (NA) | 4 (0.010) | 4/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
Only 100 of 104 total aligned reads displayed.
CCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2787428‑2787501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgggtCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGAT < CP009273/2787551‑2787485 CCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGG < 1:8492100/68‑1 CAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGC < 1:24452592/68‑1 CAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGC < 1:23809407/68‑1 GGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCG > 1:18983029/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:28037935/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:4538535/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:26177643/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:2513283/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:25020471/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:5427016/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:20044502/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:28580315/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:5847521/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:19300459/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:19151939/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:19078504/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:18083193/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:16226615/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:3439163/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:14858104/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:15222869/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:15442/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:15869481/1‑68 TCGGATTAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCG < 1:21567282/66‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:4812433/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:10907454/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:27522707/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:14890357/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:3854154/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:8308939/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:17639609/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:17234658/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:1416845/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:25734199/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:27173102/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:5733067/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:25639626/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:10072144/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:27738597/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:10922335/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:20011305/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:19619126/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:28413557/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:7138373/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:8857186/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:21190733/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:16264987/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCG < 1:23185476/66‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCAGGG > 1:11565174/1‑68 TCGGATAAGGCGTTTACGCCGCATCCAACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:25399044/67‑1 CGGATAAGGGGTTTTCGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG < 1:5212272/67‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:7544563/68‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:13086918/68‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:13606993/68‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:7680556/68‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:21326467/68‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG < 1:23673582/67‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG < 1:15658219/67‑1 CGGATAAGGCGTTTACGCCGCAACCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG < 1:6070133/67‑1 CGGATAAGGCGTTTACACCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG < 1:22234893/67‑1 CGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGCAGAAATCTATGTTGGGCGGGTCCCGCGTAT > 1:13131537/1‑68 CGTGAACAGGAAGAAATCTATGTTGGCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAG > 1:25741520/1‑68 TGAACAGGAAGAAATCTATGTTGGCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGA > 1:14159618/1‑67 ATCTATGTTGGCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTT > 1:26760361/1‑67 GTTGGCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGG > 1:3276772/1‑67 TTGGCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCC > 1:28182150/1‑68 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:6452255/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:7502637/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:3872532/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:9323782/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:6454051/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:10388272/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:9021097/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC > 1:5678444/1‑68 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:5127556/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:21567365/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:15718812/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:17681717/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:17983504/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:18044953/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:18085907/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:19234462/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:15553523/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:14297876/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:23821965/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:10905549/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:3301771/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:27928214/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:3082126/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAA < 1:19240431/67‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCATTACCCGGCCAAC > 1:8688331/1‑68 CCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACA > 1:24528743/1‑68 CCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACA > 1:24532107/1‑68 CCGGGTCACGCGTAAAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:4958067/67‑1 CGGGTCACGCGTATAATTGTTATTGTTTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACAT < 1:941093/68‑1 CGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACA < 1:22157349/67‑1 GTCTCGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGA > 1:21563889/1‑68 GTCCCGCGTATAATTGTTATTGATTCTTTTTCCCGGAGAGCGGCTACGACATACCCCGCCAACATAGA > 1:2496701/1‑68 TCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGAT > 1:25439596/1‑68 TCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGA < 1:20150109/67‑1 CCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2787428‑2787501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgggtCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGAT < CP009273/2787551‑2787485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |