| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2787501 | NA (NA) | 4 (0.010) | 4/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
Only 100 of 474 total aligned reads displayed.
ATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATGGGG > CP009273/2787485‑2787617 | aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:23069474/1‑67 (MQ=255)aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:18189656/1‑67 (MQ=255)aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:17577000/1‑67 (MQ=255)aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:16632293/1‑67 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:21567365‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:19234462‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:14297876‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc > 1:5678444‑M2/1‑61 (MQ=255) tGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGgcg < 1:13328677/67‑1 (MQ=255) ggCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggccaa > 1:28182150‑M2/1‑58 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:10965975/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:4864850/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:15075692/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCgg < 1:22492328/67‑1 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCgg < 1:8811758/67‑1 (MQ=255) cGGGTCAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg < 1:26127093/67‑1 (MQ=255) cGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg < 1:10021876/67‑1 (MQ=255) gggTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGaa < 1:3860285/68‑1 (MQ=255) gTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGaaa < 1:20052577/67‑1 (MQ=255) gTAAGGCCGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGaaa < 1:5357469/67‑1 (MQ=255) acggCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATg < 1:2022937/65‑1 (MQ=255) gCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCgg > 1:28885926/1‑68 (MQ=255) gCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCgg > 1:9030696/1‑68 (MQ=255) cGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCggg > 1:26997303/1‑68 (MQ=255) cGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCggg > 1:8262630/1‑68 (MQ=255) ccGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgcgc > 1:16371088/1‑67 (MQ=255) cGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgcgc < 1:13885401/66‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATTACAATTATACGCGGGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:8893731/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACATTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:20505523/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:792004/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:19751036/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:23459473/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:25303561/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:11828263/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:14678527/68‑1 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCtctc < 1:24422094/67‑1 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCtctc < 1:2039292/67‑1 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCtctc > 1:11742445/1‑67 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTcc < 1:10243076/68‑1 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTcc < 1:1587238/68‑1 (MQ=255) ctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTccc < 1:9847271/68‑1 (MQ=255) ctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTccc < 1:21991477/68‑1 (MQ=255) ggCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGt < 1:5287650/68‑1 (MQ=255) ggCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGt > 1:14148153/1‑68 (MQ=255) ggCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGt < 1:23738484/68‑1 (MQ=255) ggCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGt < 1:5553863/68‑1 (MQ=255) aaaaaGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGac > 1:22255689/1‑68 (MQ=255) aaaaaGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGac < 1:4300869/68‑1 (MQ=255) aaaaaGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGac > 1:6424736/1‑68 (MQ=255) aaaaaGAATCAAAAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGac < 1:10600716/68‑1 (MQ=255) aGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCTGGGCGCTCTCCCAAGTGacacac < 1:6765864/68‑1 (MQ=255) aTCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACt < 1:19026294/66‑1 (MQ=255) aTCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACt < 1:13132492/66‑1 (MQ=255) aTCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACt < 1:4744489/66‑1 (MQ=255) aTCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACt < 1:6460734/66‑1 (MQ=255) aTCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACt < 1:27970139/66‑1 (MQ=255) cAATAACAATTATACGTGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCg < 1:17780793/68‑1 (MQ=255) tAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCgaga > 1:18602460/1‑68 (MQ=255) cAATTATACGCGTGACTCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:6651457/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:741500/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:21345427/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:15529951/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:7603573/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:1241442/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:8469303/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:25814967/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:20865679/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:27828781/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:9182140/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:6123026/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:10408837/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:24528920/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:1873171/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:24119620/68‑1 (MQ=255) taCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAgg < 1:28647452/68‑1 (MQ=255) taCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCGCTCCCAAGTGACACACTTTCGAGAGGATTCAgg < 1:15257071/68‑1 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGCCACACTTTCGAGCGGATTCAGGa > 1:3744092/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGCCACACTTTCGAGAGGATTCAGGa > 1:17367496/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACCATTACGAGAGGATAAAGGa > 1:11486325/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:5968029/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:3098295/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:13466573/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:19487946/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:24773498/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:17952776/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:27087738/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:27196426/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:28494713/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:3348573/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGAAACACTTTCGAGAGGATTCAGGa > 1:27618604/1‑68 (MQ=255) gcgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATg > 1:12170640/1‑68 (MQ=255) gcgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATg > 1:25571730/1‑68 (MQ=255) gcgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATg > 1:5000438/1‑68 (MQ=255) cgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgg > 1:29099704/1‑68 (MQ=255) cgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgg > 1:26435328/1‑68 (MQ=255) cgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgg > 1:26339122/1‑68 (MQ=255) cgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgg > 1:4559950/1‑68 (MQ=255) cgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgg > 1:12865216/1‑68 (MQ=255) cgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgg > 1:10161126/1‑68 (MQ=255) gACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgggg < 1:26746365/67‑1 (MQ=255) | ATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATGGGG > CP009273/2787485‑2787617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |