| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2787501 | NA (NA) | 4 (0.010) | 4/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
Only 100 of 406 total aligned reads displayed.
CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATG > CP009273/2787434‑2787568 | cGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:21326467‑M1/68‑1 (MQ=255) tAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAg < 1:10606882/67‑1 (MQ=255) aaGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGc > 1:6259590/1‑68 (MQ=255) aGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCg < 1:1361665/68‑1 (MQ=255) gCGTTTACGTCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:13174388/1‑68 (MQ=255) gCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:9412863/1‑68 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:28357033/1‑67 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:23862633/1‑67 (MQ=255) cGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGa > 1:19085675/1‑67 (MQ=255) ttACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGcc < 1:26762740/67‑1 (MQ=255) aCGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGct < 1:22958316/68‑1 (MQ=255) cgccgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGc > 1:8294448/1‑66 (MQ=255) cgccgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGc > 1:27500456/1‑66 (MQ=255) gccgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGctct < 1:10310563/68‑1 (MQ=255) gccgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGctct < 1:14487894/68‑1 (MQ=255) cgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTACGGCGGAGCCGCTCTcc < 1:15297355/68‑1 (MQ=255) cgcATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTcc < 1:8012025/68‑1 (MQ=255) aCAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCaaaaa > 1:18235970/1‑68 (MQ=255) aCAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCaaaaa > 1:26122971/1‑68 (MQ=255) aCAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCaaaaa > 1:16396613/1‑68 (MQ=255) aaTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGa > 1:27860222/1‑68 (MQ=255) aaTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGa < 1:18689231/68‑1 (MQ=255) aaTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGa > 1:5463515/1‑68 (MQ=255) aTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGaa < 1:25338746/68‑1 (MQ=255) aTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGaa > 1:7049336/1‑68 (MQ=255) aTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGaa > 1:1589381/1‑68 (MQ=255) aTCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGaa > 1:15567371/1‑68 (MQ=255) tCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGaa > 1:2352962/1‑67 (MQ=255) tGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCa < 1:16725090/68‑1 (MQ=255) tGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCa < 1:5193776/68‑1 (MQ=255) tGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCa < 1:10434775/68‑1 (MQ=255) tGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCa < 1:2194974/68‑1 (MQ=255) gTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCaa < 1:1145451/68‑1 (MQ=255) gTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCaa < 1:4202129/68‑1 (MQ=255) cGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa > 1:25801074/1‑67 (MQ=255) cGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa > 1:27005909/1‑67 (MQ=255) cGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa > 1:4067568/1‑67 (MQ=255) cGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATa > 1:2905290/1‑67 (MQ=255) cGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCCGCAAAAAGAATaaaaa > 1:4746863/1‑65 (MQ=255) gTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAAc < 1:11849853/68‑1 (MQ=255) gcaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:23722007/65‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACaa < 1:1241539/68‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACaa < 1:2981417/68‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACaa < 1:5110548/68‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:28847975/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:13796232/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:11232679/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:583144/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:761750/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:25609639/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:7777380/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:878809/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:886937/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:24176006/67‑1 (MQ=255) gAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:20959654/67‑1 (MQ=255) gAACAGGAAGAAAGCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:20046483/67‑1 (MQ=255) gAACAGGAAGAAAGCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACa < 1:12766989/67‑1 (MQ=255) aaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt > 1:19644389/1‑68 (MQ=255) aaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt > 1:22468494/1‑68 (MQ=255) aaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt > 1:26469524/1‑68 (MQ=255) aaCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt > 1:11044776/1‑68 (MQ=255) aCAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAAt < 1:23051227/67‑1 (MQ=255) aagaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCCCCGGCAAAAAGAATCAATAACAATTATAc > 1:14851130/1‑67 (MQ=255) agaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATAcgc < 1:3078581/68‑1 (MQ=255) agaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATAcgc < 1:12647253/68‑1 (MQ=255) agaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATAcg < 1:22741385/67‑1 (MQ=255) agaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATAcg < 1:7410333/67‑1 (MQ=255) agaaATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATAcg < 1:1571113/67‑1 (MQ=255) aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:17577000/1‑67 (MQ=255) aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:28594408/1‑67 (MQ=255) aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:24574977/1‑67 (MQ=255) tCTATGTTGGCGGGGTATGTCGTAGCCGCTCTCCGGGAAAAAGAATCAATAACAATTATACGCGGGac > 1:2496701‑M2/1‑66 (MQ=255) tCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGAGac > 1:21563889‑M2/1‑66 (MQ=255) gTTGGCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccgg > 1:3276772‑M1/1‑11 (MQ=255) gTTGGCCGGGTAATGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc > 1:8688331‑M2/1‑61 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:17983504‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:17681717‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:24367527‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:3872532‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:3301771‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:27928214‑M2/68‑8 (MQ=255) ttGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:19240431‑M2/67‑8 (MQ=255) tGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGgcg < 1:20289225/67‑1 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:18085907‑M1/68‑62 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:14297876‑M1/68‑62 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:10905549‑M1/68‑62 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:6452255‑M1/68‑62 (MQ=255) gCCGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:9323782‑M1/68‑62 (MQ=255) ccGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaaca > 1:24528743‑M1/1‑6 (MQ=255) ccGGGTcacgcgtaaaattgttattgattctttttgccggagagcggctccgccttacccggccaac < 1:4958067‑M1/67‑62 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:15117993/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:10965975/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:13418822/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:9044363/1‑68 (MQ=255) cGGGTcacgcgtataattgttattgattctttttgccggagagcggctccgccttacccggccaaca < 1:22157349‑M1/67‑63 (MQ=255) cGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg < 1:21695679/67‑1 (MQ=255) cGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg < 1:10021876/67‑1 (MQ=255) cGGGTAAGGCCGAGCAGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg < 1:6473333/67‑1 (MQ=255) gggTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGaa < 1:20739185/68‑1 (MQ=255) tAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAAt < 1:3776408/67‑1 (MQ=255) | CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATG > CP009273/2787434‑2787568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |