BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3462138	400 (1.130)	19 (0.080)	8/78	NT	5.2%	coding (1075/2694 nt)	chiA	periplasmic endochitinase
*	?	CP009273	3462463 =	416 (1.690)	19 (0.080)	8/78	NT	5.2%	coding (750/2694 nt)	chiA	periplasmic endochitinase

Only 100 of 387 total aligned reads displayed.

ACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3462055‑3462138

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccaccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  >  CP009273/3462463‑3462529

ACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAA                                                                                     <  1:765079/68‑1

ACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAA                                                                                     <  1:3736191/68‑1

  GCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACC                                                                                   <  1:15911091/68‑1

  GCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACC                                                                                   <  1:18022878/68‑1

  GCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACC                                                                                   <  1:3272906/68‑1

  GCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAAC                                                                                    >  1:2752498/1‑67

  GCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAAC                                                                                    >  1:4540793/1‑67

   CTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGATGGTACCCCGTGGGCAATCTTTAGCCCCAACCC                                                                                  >  1:21541826/1‑68

    TCGAGACGCCATGGGTTCTTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCA                                                                                 <  1:6878360/68‑1

    TCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCA                                                                                 <  1:20112671/68‑1

    TCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCC                                                                                  <  1:17022524/67‑1

     CGAGACGCCATGGGTTATTGGAGTTTTCATCGCTGGTACCCCGTGGGCAATCTGTTGACACAACaaa                                                                                 >  1:12334089/1‑64

     CGAGACGCCATGGGTTATTGGAGTTTTCATCGATGGTACCCCCTGGGCAATCTTTAGACCCAACCCA                                                                                 >  1:28756607/1‑67

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           >  1:10733298/1‑68

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           >  1:28539616/1‑68

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           >  1:6133832/1‑68

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGC                                                                           >  1:10008063/1‑68

          CGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACACAACCCACCAGGC                                                                           >  1:2549619/1‑68

            CCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGT                                                                         >  1:22795680/1‑68

             CATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTT                                                                        <  1:15005683/68‑1

              ATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGT                                                                         >  1:16956597/1‑66

              ATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGT                                                                         >  1:21134851/1‑66

              ATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGT                                                                         >  1:12825272/1‑66

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:22186434/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:23539533/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:2065302/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:2570295/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:27257669/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:9810520/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:16764773/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:1542733/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:9079201/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:16379550/68‑1

               TGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCT                                                                      <  1:11124675/68‑1

                 GGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTA                                                                    >  1:7539166/1‑68

                        GGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTATAAAag                                                              >  1:18990022/1‑65

                                          agCCCGTGGGCAATGTTTCGACCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGT                                           <  1:28284111/66‑1

                                          ACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTATAAACGGAGCCGTTATAAATAACGT                                           >  1:24341401/1‑68

                                               GTGGGCAATATTTAGAGCCAACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAT                                      <  1:13203845/68‑1

                                                   GCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAATGACGCCGTTATAGATAACTTACAATGTAt                                  >  1:17308533/1‑67

                                                   GCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAATCACGCCGTTTTAAATAACGTACAATGTAt                                  >  1:26294564/1‑67

                                                              cCCCAACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTT                         >  1:14335294/2‑66

                                                                   ACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACC                  <  1:1250561/68‑1

                                                                     CCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTT                <  1:927150/68‑1

                                                                     CCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTT                >  1:2503649/1‑68

                                                                     CCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTT                <  1:6657971/68‑1

                                                                     CCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTT                >  1:15607859/1‑68

                                                                     CCACCAGGCGTTATTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTT                <  1:4655908/68‑1

                                                                      CACTAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:7866634/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:20315492/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:27117117/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:18292867/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:8659399/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:18776311/68‑1

                                                                      CACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTT               <  1:15955755/68‑1

                                                                         CAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCATCCTGACCTTTCCA            >  1:9720498/1‑68

                                                                          AGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAG           >  1:5714086/1‑68

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        >  1:19365079/1‑68

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:3544031/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:27655305/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:2798261/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:28218736/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:9551439/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:3862693/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:4164238/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:24809374/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:24056527/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:23955103/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:1020931/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:22672756/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:22567220/66‑1

                                                                             CGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGG          <  1:19753714/66‑1

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTA       <  1:14484335/68‑1

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTA       <  1:2839551/68‑1

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        <  1:17131640/67‑1

                                                                              GTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        <  1:14167949/67‑1

                                                                               TTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCT        >  1:26727024/1‑66

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGTACCTTCCTGACCTTTCCAGGCTAC      <  1:21837834/67‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:11682051/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:8450084/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:11811172/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:26505484/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:13546803/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:523612/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:13986313/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:10375169/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:24582498/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:7502968/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:17628150/68‑1

                                                                                TCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTAC      <  1:29218716/67‑1

                                                                                TCTTATAAATGCCGCCGTTAAAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACT     <  1:23107056/68‑1

                                                                                  TTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTAC   <  1:3673602/68‑1

                                                                                  TTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTAC   <  1:18444012/68‑1

                                                                                  TTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTAC   <  1:16534948/68‑1

                                                                                  TTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTAC   <  1:15181106/68‑1

                                                                                  TTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTAC   <  1:1221667/68‑1

                                                                                  TTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTAC   <  1:10062315/68‑1

                                                                                   TATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  <  1:7256951/68‑1

                                                                                   TATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  <  1:8245338/68‑1

                                                                                   TATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  >  1:11450035/1‑68

ACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3462055‑3462138

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccaccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA  >  CP009273/3462463‑3462529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.