| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3462138 | 400 (1.130) | 19 (0.080) | 8/78 | NT | 5.2% | coding (1075/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | 3462463 = | 416 (1.690) | coding (750/2694 nt) | chiA | periplasmic endochitinase | |||||
Only 100 of 716 total aligned reads displayed.
GGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAT > CP009273/3462071‑3462205 | ggTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTg > 1:18120761/1‑68 (MQ=255) ggTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTg > 1:4939310/1‑68 (MQ=255) gTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTg < 1:25890668/67‑1 (MQ=255) gTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGt > 1:10035797/1‑68 (MQ=255) ttATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTTTa > 1:17350306/1‑68 (MQ=255) ttATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGtt > 1:9523711/1‑67 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTataaaca > 1:5654735‑M1/1‑61 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa < 1:2272102/68‑1 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa < 1:11008790/68‑1 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa < 1:18307460/68‑1 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa < 1:14681125/68‑1 (MQ=255) ggAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTataaaag > 1:18990022‑M1/1‑60 (MQ=255) ggAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTTTaaaaag > 1:7073314/1‑65 (MQ=255) ggAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAt > 1:23235262/1‑68 (MQ=255) ggAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAt > 1:24718672/1‑68 (MQ=255) ggAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAt > 1:21668106/1‑68 (MQ=255) aGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAtt < 1:6831102/67‑1 (MQ=255) aGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAtt > 1:16831412/1‑67 (MQ=255) aGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAtt > 1:23559986/1‑67 (MQ=255) ttttCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTAcc > 1:19124080/1‑68 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaa < 1:13200481/67‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaa < 1:8350354/67‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:24110796/65‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:3839898/65‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:23485188/65‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:16088197/65‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:8675287/65‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:4190751/65‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:7286536/65‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:9019094/65‑1 (MQ=255) tGGCACCGCGTGGGCAATATTTAGAGCCTACCCACCAGGCGTTCTTataaatgccgccgttatagat < 1:28498390‑M1/67‑22 (MQ=255) aCCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACAt > 1:27438446/1‑68 (MQ=255) ccccGTGGGCAATCTTTAGACCCAACCCCCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATg > 1:470747/1‑68 (MQ=255) ccccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATg > 1:4013902/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAAGAGTACCATTGAATATAACAt > 1:22188933/1‑66 (MQ=39) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACGCGGCCATTTAAGATAACATgg > 1:21385739/1‑68 (MQ=25) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg > 1:9701782/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAAAATTACCATTGAAAATAACGTgg > 1:26219877/1‑68 (MQ=255) cGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTa > 1:17689414/1‑68 (MQ=255) ggCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAAtt > 1:15311757/1‑68 (MQ=255) gCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAAtt < 1:14909175/67‑1 (MQ=255) gCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAAtt < 1:29043582/67‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:11463644/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:22840387/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:3427384/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:12083299/68‑1 (MQ=255) tAGACCCAACCCACC‑GGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt < 1:12585630/68‑1 (MQ=255) aGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt < 1:27026761/68‑1 (MQ=255) gACCCAACCCACCAGGCGTTCTTGTAAACATTACAATTTAAAATAACATGGAAAATTTAGCTACCtt > 1:28384600/1‑67 (MQ=38) cccaacctcCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTGCCtt > 1:5348066/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:22468089/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:255355/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:17873667/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTCAAAATAACATGGTTAATTTAGCTACCtt > 1:977597/1‑65 (MQ=39) cccaacccaCCAGGCGTTCTTGTAAAATTTACCATTGAAAATAACATGGGAAATTTCGCGACCtt > 1:17290102/1‑65 (MQ=37) ccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTg < 1:11684737/68‑1 (MQ=255) ccaccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctt < 1:6657971‑M1/68‑54 (MQ=255) ccaccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctt > 1:13873943‑M1/1‑15 (MQ=255) ccaccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctt < 1:8041918‑M1/68‑54 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:15607516‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:16996311‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:27692933‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:2722414‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:24841934‑M1/68‑55 (MQ=255) caccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCt < 1:2185324/68‑1 (MQ=255) caccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCt < 1:1971872/68‑1 (MQ=255) accaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt > 1:15926013‑M1/1‑13 (MQ=255) accaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt > 1:18623077‑M1/1‑13 (MQ=255) caGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTcc > 1:19444552/1‑67 (MQ=255) aGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccag > 1:12313726‑M1/1‑10 (MQ=255) cGTTCTTataaatgccgccgttatggataacgtaccatgtagaagaaccttcctgacctttccagg < 1:28065763‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:7513447‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:4542853‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:23955103‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:776903‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:20069396‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:201954‑M1/66‑60 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACg < 1:1288720/66‑1 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACg < 1:1578917/66‑1 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct < 1:14167949‑M1/67‑62 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct < 1:13298434‑M1/67‑62 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct < 1:24521773‑M1/67‑62 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct < 1:14418641‑M1/67‑62 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct < 1:28258960‑M1/67‑62 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct < 1:20436083‑M1/67‑62 (MQ=255) gTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCt < 1:9182615/67‑1 (MQ=255) ttCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCtt > 1:28935871/1‑67 (MQ=255) ttCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCtt > 1:13680709/1‑67 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:6054704‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:26505484‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:21156527‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:25241453‑M1/68‑65 (MQ=255) tCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTg < 1:10442220/67‑1 (MQ=255) tCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGc < 1:3129186/68‑1 (MQ=255) ttataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactac < 1:11349093‑M1/68‑67 (MQ=255) ttataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactac < 1:16534948‑M1/68‑67 (MQ=255) ttataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactac < 1:3673602‑M1/68‑67 (MQ=255) tataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactaca < 1:20907772‑M1/68‑68 (MQ=255) tataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactaca < 1:10113612‑M1/68‑68 (MQ=255) tGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTCGCAAt < 1:6372857/68‑1 (MQ=255) | GGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAT > CP009273/3462071‑3462205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |