| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3462138 | 400 (1.130) | 19 (0.080) | 8/78 | NT | 5.2% | coding (1075/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | 3462463 = | 416 (1.690) | coding (750/2694 nt) | chiA | periplasmic endochitinase | |||||
Only 100 of 707 total aligned reads displayed.
GGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA > CP009273/3462396‑3462529 | ggTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCAGCGCCTACCCACCAGGCGTTTTta > 1:19660023/1‑68 (MQ=255)ggTTACTGGCATCGTTTTATTTCGCATCGCCAGGGCAATTTGAAGCGCCTACCCACCAGGCTttatta > 1:10169361/1‑68 (MQ=21) gTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTta < 1:12653764/67‑1 (MQ=255) tACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATaa < 1:24504377/68‑1 (MQ=255) aCTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCAGCGGCTACCCACCAGGCTTTATTATaaa > 1:16645841/1‑68 (MQ=37) tGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTTTAATAAAtt > 1:4970611/1‑67 (MQ=39) tGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTGTTATAAAt > 1:25550603/1‑67 (MQ=255) tGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAAt > 1:11084525/1‑67 (MQ=255) tGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTATTATaaaa > 1:26735345/1‑66 (MQ=255) ggCATCGTTTTCTTTCGCATCGCCTGGGCAGTTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATg > 1:6445910/1‑67 (MQ=255) ggCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATg > 1:8131293/1‑67 (MQ=255) gCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATgcc > 1:12272786/1‑68 (MQ=255) tggTTTTCTTTCGGATCCCCTGGGCAATTTTCCGCGCCTACCCACCAGGCGTTCTTATAAATgccgcc < 1:2941541/66‑1 (MQ=38) tCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATgccgcc < 1:17395242/68‑1 (MQ=255) tttttCTTTGGGAACCCCTGGGCAATTTGAAGCGCCTAACCACCATGCGGTCTTATAAATGCCGCCGt < 1:25091166/67‑1 (MQ=255) tttttCTTTCGCATCGCCTGGGCAATTTGTCGAGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:15987317/67‑1 (MQ=38) tttttCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:3289842/67‑1 (MQ=255) tttttCTTTCGCATCGCCTGGGCAATTTGACGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:17148513/67‑1 (MQ=255) tttttCTTTCGCAACGCGTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:18825629/67‑1 (MQ=39) tttttCGTTTGAAGCGCGTGGGCAATTTGTCGCCCCTACCAACCAGGCGTTCTTATAAATGCCGCCGt < 1:20191090/67‑1 (MQ=19) gTTTTCTTTCGGATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:13922377/68‑1 (MQ=255) gTTTTCTTTCGCATCGGCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:842405/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTTCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:22545294/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTTCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:24663646/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGGCTACCCACCACGCGTTCTTATAAATGCCGCCGt < 1:1640281/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:2359933/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:22163722/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:24872395/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:9041583/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:12454904/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATGTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:20651635/68‑1 (MQ=255) ttttCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:4214925/67‑1 (MQ=255) tttgCTTTGGCATCGCCTGGGCAATTTGTCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:18688068/67‑1 (MQ=38) tttctttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTta < 1:11865622/68‑1 (MQ=255) ttctttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTtat < 1:22698997/68‑1 (MQ=255) ttctttcGCATCGCCTGGGCAATTTGCCGAGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTtat < 1:8867761/68‑1 (MQ=255) ttggCATCGCCTGGGCAATATGACGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:13853225/65‑1 (MQ=39) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:11510187/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:4033946/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:12793740/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:19216792/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:19972527/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:6791881/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt > 1:20967355/1‑68 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt > 1:858185/1‑68 (MQ=255) tcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATa < 1:4804114/68‑1 (MQ=255) cGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATaa < 1:25278868/68‑1 (MQ=255) gtaccccgtgggcaatctttagagccaacccaccaggcgttcttATAAATGCCGCCGt < 1:12136712‑M2/14‑1 (MQ=255) aTCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt < 1:7206674/68‑1 (MQ=255) aTCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt < 1:23104849/68‑1 (MQ=255) aTCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt > 1:23409741/1‑68 (MQ=255) aTCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt < 1:25753205/68‑1 (MQ=255) gCCTGGGCAATTTTCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt < 1:13196095/65‑1 (MQ=255) gCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTAcc < 1:27584716/68‑1 (MQ=255) cccTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt < 1:28920631/64‑1 (MQ=255) ccTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCa > 1:28447294/1‑68 (MQ=255) gtGGGCAATTTGCCGAGCCAACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:357390/67‑1 (MQ=38) cTGGGCAATTTTCCGCGCCAACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:23877205/68‑1 (MQ=255) cTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:13301762/68‑1 (MQ=255) gggcaattttaagagcctacccaccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGt < 1:27349002‑M2/33‑1 (MQ=255) gcaatctttagacccaacccaccaggcgttcttGTAAATCACGCCGTTTTAAATAACGTACAATGtat > 1:26294564‑M2/34‑67 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTag > 1:9649322/1‑68 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTag > 1:10869438/1‑68 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:5322047/67‑1 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:2283336/67‑1 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:13667745/67‑1 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:14273755/67‑1 (MQ=255) cAATTTTACGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTag < 1:15367321/67‑1 (MQ=255) cAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTaga > 1:21789296/1‑68 (MQ=255) cgcgCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCtt < 1:1000407/68‑1 (MQ=255) cgcgCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCtt < 1:20379687/68‑1 (MQ=255) agcgcCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCt < 1:14921264/66‑1 (MQ=255) cTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGa < 1:2121834/68‑1 (MQ=255) cccACCAGGCGTTCTTATAAAAGCAGCCGTTATATATAACATGCCAATTTTAAGAACCTTCCTGACCt > 1:9513021/1‑68 (MQ=255) ccaccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCtt > 1:15557972‑M2/16‑68 (MQ=255) ccaccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCtt < 1:927150‑M2/53‑1 (MQ=255) caccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCttt < 1:14395023‑M2/54‑1 (MQ=255) caggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGACCCTTCCTGAAATTTCCa > 1:17749629‑M2/12‑68 (MQ=255) aggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAg > 1:3792171‑M2/11‑68 (MQ=255) aggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAg > 1:5714086‑M2/11‑68 (MQ=255) ggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAg > 1:242705‑M2/10‑67 (MQ=255) gcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAAACTTCCTGACCTTTCCAg > 1:18267751‑M2/9‑66 (MQ=255) cgttcttATAAATGCCGCCGTTATGGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:28065763‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:11319553‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:776903‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:9783228‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:18395674‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGct > 1:28684014‑M2/8‑68 (MQ=255) gttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGct < 1:21573942‑M2/61‑1 (MQ=255) gttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGct < 1:27695039‑M2/61‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:608541‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:16856135‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:7502968‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:4598856‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:21456355‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:28259299‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:10375169‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:27165144‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctac < 1:17527220‑M2/63‑1 (MQ=255) ttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCtactac < 1:1568386‑M2/66‑1 (MQ=255) | GGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA > CP009273/3462396‑3462529 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |