| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4535241 = | 422 (1.200) | 7 (0.020) | 5/94 | NT | 2.0% | coding (329/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| ? | CP009273 | 4535424 = | 346 (1.170) | coding (512/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 101 total aligned reads displayed.
AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4535315‑4535241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgtgGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGG > CP009273/4535424‑4535490 AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:10319140/1‑68AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:22381349/1‑68 GGCATCATCCGCCAGCAGATTCATACCGGCGCCAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:23162327/1‑67 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:13079379/1‑67 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:21516775/1‑67 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:2242846/1‑67 CATCATCCGCCCGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGC < 1:26000384/67‑1 CATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGC > 1:19104132/1‑67 CATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC < 1:20198437/65‑1 CATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC < 1:23892794/65‑1 ATCATCCGCCAGCAGATTCATACCGGCGACAGCAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:7477893/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:2388656/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:17617870/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:1679746/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:19622670/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:25228090/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCG < 1:21697631/67‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATCCTGGCGAGTTGCGCGCG < 1:25044416/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:10143749/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:24025410/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:26025115/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:26295488/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:17898049/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:27614658/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:721496/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:12982580/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:6159391/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:6634624/68‑1 CATCCGCCAGCAGATTCATACCGTCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:13115969/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:4995766/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:13077210/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:3225338/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:3856687/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:27790739/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:14004673/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:7467276/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:6883141/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT > 1:4350204/1‑68 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:8147608/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:20329001/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:17435518/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT > 1:5858689/1‑68 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:17048496/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT > 1:6173905/1‑68 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:27536803/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:16864079/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:19314152/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:19864044/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:5811977/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT > 1:19965171/1‑68 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:27195196/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:20347009/68‑1 ATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG < 1:16594014/68‑1 ATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG < 1:5756074/68‑1 ATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG < 1:28482722/68‑1 TCCGCCAGCAGATTCATACCGGCGACAGCCGCCGTATTCGGCCCCATACTGGCGAGTTGCGCGCGTG > 1:25224889/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:25306094/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:10395120/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:26778789/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:14292317/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:7131527/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:23531279/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:23194275/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:4004912/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:15271485/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:21963903/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:578505/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:20182678/1‑67 CAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTGGTTATA < 1:16568490/68‑1 TTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTGGTTATATTCC < 1:2646303/65‑1 ATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTGGTTATATTCCTCCTGA < 1:18525638/68‑1 ATACCGGCGACAGAAGCCGTATTCAGCCCCATACAGGCGAGTTGCGCGCGTGGTTATATTCCTCCTGA < 1:10233172/68‑1 cCCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTGGTTATATTCCGCCTGAGT < 1:22928582/67‑1 ACCGCCGACAGAAGCCGTAATCAGCCCCATACTGGCGAGTTGCGCGCGTGGTTATATTCCTCCTGAGT < 1:5721851/68‑1 CGACAGAAGCCGTATTCAGCCCCATACGGGCGAGTTGCGCGCGTGGTTATATTCCGCCTGAGTTATG < 1:17055618/67‑1 GCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAAT > 1:12051009/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:15487448/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:6263058/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:6188304/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:16964294/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:12855789/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:20918682/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:23298419/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:25262885/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:23544451/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:24691671/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:28316413/1‑68 CGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTC > 1:13771357/1‑68 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGG > 1:20399262/1‑68 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:7688220/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:10350170/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:13494586/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:8987300/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:15729002/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:17438480/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:19876516/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:20600702/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:21592368/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:4223706/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:37775/67‑1 AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4535315‑4535241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgtgGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGG > CP009273/4535424‑4535490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |