| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4535241 = | 422 (1.200) | 7 (0.020) | 5/94 | NT | 2.0% | coding (329/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| ? | CP009273 | 4535424 = | 346 (1.170) | coding (512/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 494 total aligned reads displayed.
CTGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGG > CP009273/4535357‑4535490 | cTGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCgggg < 1:18161446/68‑1 (MQ=255) tGGATTTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:10418295/68‑1 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGATTAATCGCGCGCGTGGt < 1:20603741/68‑1 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:28537957/68‑1 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:27613324/68‑1 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt > 1:11057726/1‑68 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:2311437/68‑1 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:11569708/68‑1 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:22509270/68‑1 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:20285087/68‑1 (MQ=255) tGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:14382480/68‑1 (MQ=255) tGGATGTTGGGCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt < 1:15685689/68‑1 (MQ=255) ggATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGtt < 1:9843441/68‑1 (MQ=255) aTGTTGGTCAGCAGCGACTGAGCCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtat > 1:17959382/1‑68 (MQ=255) aTGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtat > 1:2096903/1‑68 (MQ=255) aTGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtat > 1:22770683/1‑68 (MQ=255) aTGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtat > 1:583270/1‑68 (MQ=255) aTGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtat > 1:1628801/1‑68 (MQ=255) aTGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCACGCATTTATGAGTAATCGCGCGCGTGGTtat > 1:23752363/1‑68 (MQ=255) tGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtata < 1:8141568/68‑1 (MQ=255) tGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtata < 1:2353415/68‑1 (MQ=255) tGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTtata < 1:15892019/68‑1 (MQ=255) gTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTatat > 1:13618721/1‑68 (MQ=255) gTTGGTCAGCAGCGACTGAACATGGCGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTatat > 1:6348488/1‑68 (MQ=255) ggTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATtcc < 1:2912959/68‑1 (MQ=255) ggTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATtcc < 1:16787365/68‑1 (MQ=255) tCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATtcct < 1:18559707/67‑1 (MQ=255) tCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATtcct < 1:11328338/67‑1 (MQ=255) tCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATtcct > 1:7158052/1‑67 (MQ=255) ataccggcgacagaagccgtattcagccccatacaggcgagttgcgcgcgtgGTTATATTCCTCCTGa < 1:10233172‑M2/16‑1 (MQ=255) agcGACTGAACCTGTCGATCGCTCAGGCATTTATGTGTAATCGCGCGCGTGTTTATATTCCTCCTGa < 1:18736633/67‑1 (MQ=255) agcGACTGAACCTGACGATCGCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGa < 1:5042038/67‑1 (MQ=255) agcGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGa < 1:25915954/67‑1 (MQ=255) agcGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGa < 1:11734230/67‑1 (MQ=255) agcGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAg > 1:15072417/1‑68 (MQ=255) agcGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAg > 1:7815690/1‑68 (MQ=255) agcGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAg > 1:8418042/1‑68 (MQ=255) accgccgacagaagccgtaatcagccccatactggcgagttgcgcgcgtgGTTATATTCCTCCTGAGt < 1:5721851‑M2/18‑1 (MQ=255) gACTGACCCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGt < 1:5351917/66‑1 (MQ=255) gACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAg < 1:24202378/65‑1 (MQ=255) gACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAg < 1:18971040/65‑1 (MQ=255) gACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGt < 1:4218075/66‑1 (MQ=255) gACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGt < 1:6604971/66‑1 (MQ=255) gACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGt < 1:27201957/66‑1 (MQ=255) gACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGt < 1:13145073/66‑1 (MQ=255) gACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGt < 1:7481981/66‑1 (MQ=255) gACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGt < 1:17781617/66‑1 (MQ=255) cTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATg > 1:26390779/1‑68 (MQ=255) gAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATggg < 1:16968871/68‑1 (MQ=255) cccTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTGATATTCCTCCTGAGTTATGGGa > 1:24896881/2‑67 (MQ=255) aCCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGa < 1:1064203/67‑1 (MQ=255) aCCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGAt < 1:15385980/68‑1 (MQ=255) gACTATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATcgcg < 1:8707631/68‑1 (MQ=255) gACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCg < 1:21883968/68‑1 (MQ=255) aCGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCgg > 1:12401608/1‑68 (MQ=255) aCGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCgg > 1:27929159/1‑68 (MQ=255) cGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGt > 1:48127/1‑68 (MQ=255) ccTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTaa > 1:3914614/1‑68 (MQ=255) ccTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTaa > 1:9488557/1‑68 (MQ=255) cTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAAt < 1:8033715/68‑1 (MQ=255) cTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAAt < 1:14156132/68‑1 (MQ=255) cTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAAt < 1:12640951/68‑1 (MQ=255) cTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAAt < 1:6961936/68‑1 (MQ=255) tCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAAt > 1:2883348/1‑67 (MQ=255) aGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGcc > 1:6010893/1‑68 (MQ=255) ggCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCg > 1:4431961/1‑68 (MQ=255) gCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCgg > 1:21624963/1‑68 (MQ=255) gCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCgg > 1:14542155/1‑68 (MQ=255) cATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCgg < 1:24032825/67‑1 (MQ=255) aTTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGAt > 1:2120310/1‑68 (MQ=255) aTTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGAt > 1:3663988/1‑68 (MQ=255) aTTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGAt > 1:15568360/1‑68 (MQ=255) tATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGc < 1:8998156/68‑1 (MQ=255) tATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGc < 1:19828773/68‑1 (MQ=255) tATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGc < 1:17365563/68‑1 (MQ=255) aTGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGc > 1:16461204/1‑67 (MQ=255) gAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCa < 1:14778571/68‑1 (MQ=255) gAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCa < 1:20542729/68‑1 (MQ=255) gAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCa < 1:6194373/68‑1 (MQ=255) gAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCa < 1:22293891/68‑1 (MQ=255) aGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCaa > 1:13988537/1‑68 (MQ=255) aGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCaa > 1:16049092/1‑68 (MQ=255) aGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCaa > 1:12945454/1‑68 (MQ=255) aGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCaa > 1:2086935/1‑68 (MQ=255) gTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCaa < 1:3367888/67‑1 (MQ=255) gTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAt > 1:4402367/1‑68 (MQ=255) gTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAt > 1:3185956/1‑68 (MQ=255) gTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAt > 1:25523729/1‑68 (MQ=255) gTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAt > 1:17241485/1‑68 (MQ=255) aaTCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAtt < 1:5608703/67‑1 (MQ=255) aaTCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAt < 1:10014339/66‑1 (MQ=255) aaTCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAt < 1:12102098/66‑1 (MQ=255) aaTCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAAt < 1:24519527/66‑1 (MQ=255) aTCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATtat > 1:9187031/1‑68 (MQ=255) aTCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATtat > 1:26787211/1‑68 (MQ=255) cgcgcgcgTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATaa > 1:19266845/1‑68 (MQ=255) cgcgcgtgGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAAtt > 1:25262885‑M2/9‑68 (MQ=255) cgcgcgtgGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAAtt > 1:28316413‑M2/9‑68 (MQ=255) cgcgtgGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTc > 1:13771357‑M2/7‑68 (MQ=255) gGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCg < 1:13494586‑M2/66‑1 (MQ=255) | CTGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGG > CP009273/4535357‑4535490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |