| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4535241 = | 422 (1.200) | 7 (0.020) | 5/94 | NT | 2.0% | coding (329/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| ? | CP009273 | 4535424 = | 346 (1.170) | coding (512/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 569 total aligned reads displayed.
TATATGGCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGAT > CP009273/4535174‑4535308 | ccgctgaaattataattgagcaatccggcattaataccgggatcccataactcaggaggaatataacc > 1:20399262‑M1/68‑68 (MQ=255) cgctgaaattataattgagcaatccggcattaataccgggatcccataactcaggaggaatataacc < 1:19876516‑M1/1‑1 (MQ=255) cgctgaaattataattgagcaatccggcattaataccgggatcccataactcaggaggaatataacc < 1:17438480‑M1/1‑1 (MQ=255) atGGCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGacac > 1:8973333/1‑67 (MQ=255) atGGCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGacac > 1:22306827/1‑67 (MQ=255) atGGCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGacac > 1:12680611/1‑67 (MQ=255) tGGCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgc > 1:21938780/1‑68 (MQ=255) tGGCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgc > 1:16756369/1‑68 (MQ=255) ggCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgcg < 1:28763229/68‑1 (MQ=255) ggCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgc > 1:9610687/1‑67 (MQ=255) ggCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgc > 1:23766027/1‑67 (MQ=255) ggCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgc > 1:20569229/1‑67 (MQ=255) ggCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgc > 1:19670604/1‑67 (MQ=255) ggCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgc > 1:1840867/1‑67 (MQ=255) ggCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgc > 1:16522680/1‑67 (MQ=255) ggCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgc > 1:12028570/1‑67 (MQ=255) ggCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgc > 1:10063281/1‑67 (MQ=255) gaaattataattgagcaatccggcattaataccgggatcccataactcaggaggaatataacCAcgcg > 1:13771357‑M1/63‑68 (MQ=255) gCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgcgc > 1:308023/1‑68 (MQ=255) gCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgcgc > 1:17279251/1‑68 (MQ=255) gCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgcgc > 1:1596770/1‑68 (MQ=255) gCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgcgc > 1:15780619/1‑68 (MQ=255) gCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACAcgcgc > 1:15441737/1‑68 (MQ=255) gCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTACCTGCCTGACAcgcgc > 1:3495250/1‑68 (MQ=255) aattataattgagcaatccggcattaataccgggatcccataactcaggaggaatataacCAcgcgcg > 1:16964294‑M1/61‑68 (MQ=255) aattataattgagcaatccggcattaataccgggatcccataactcaggaggaatataacCAcgcgcg > 1:23544451‑M1/61‑68 (MQ=255) aattataattgagcaatccggcattaataccgggatcccataactcaggaggaatataacCAcgcgcg > 1:6263058‑M1/61‑68 (MQ=255) aaCGCGTGATGTCACATTTTATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACgcgcgc > 1:18129597/1‑68 (MQ=255) aaCGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACgcgcgc > 1:22526026/1‑68 (MQ=255) aaCGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACgcgcgc > 1:23980468/1‑68 (MQ=255) aaCGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACgcgcgc > 1:4473504/1‑68 (MQ=255) aaCGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACgcgcgc > 1:5344640/1‑68 (MQ=255) aaCGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACgcgcgc > 1:24872367/1‑68 (MQ=255) aaCGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACgcgcgc > 1:18565145/1‑68 (MQ=255) aaCGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACgcgcgc > 1:14156929/1‑68 (MQ=255) aaCGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACgcgcgc > 1:9018056/1‑68 (MQ=255) aaCGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACgcgcgc > 1:13407726/1‑68 (MQ=255) aaCGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACgcgcgc > 1:7520619/1‑68 (MQ=255) aaCGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACgcgcgc > 1:1804737/1‑68 (MQ=255) aCGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCa < 1:4895946/68‑1 (MQ=255) cgcgTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCa > 1:16359598/1‑67 (MQ=255) cgTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAAc > 1:18924641/1‑67 (MQ=255) gATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCg < 1:17819858/67‑1 (MQ=255) gATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCg < 1:13117491/67‑1 (MQ=255) gATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCg < 1:2805850/67‑1 (MQ=255) aTGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGcc > 1:20937613/1‑68 (MQ=255) tGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGcc < 1:16243076/67‑1 (MQ=255) gTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAg > 1:28359778/1‑68 (MQ=255) gTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAg > 1:19228021/1‑68 (MQ=255) cacaTTTAATACGGGCGACAGTGTACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGt < 1:22842234/67‑1 (MQ=255) cacaTTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGt < 1:26336055/67‑1 (MQ=255) acaTTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTAt > 1:14481561/1‑68 (MQ=255) aTTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATgg > 1:27466714/1‑68 (MQ=255) aTTTAATACGGGCGACAGTGAACAAGGGATTGTTACCTGCCTGACACGCGCGCAACTCGCCAGTATgg > 1:21307538/1‑68 (MQ=255) tttAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATggg < 1:26868812/68‑1 (MQ=255) tttAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATggg < 1:5884961/68‑1 (MQ=255) ttAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATggg > 1:13973739/1‑67 (MQ=255) ttAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATggg > 1:12199836/1‑67 (MQ=255) aTACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTg > 1:11669506/1‑68 (MQ=255) aTACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTg > 1:21529716/1‑68 (MQ=255) tACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGa > 1:24164860/1‑68 (MQ=255) tACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGa > 1:10003844/1‑68 (MQ=255) tACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGa < 1:8652573/68‑1 (MQ=255) tACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGa > 1:1244594/1‑68 (MQ=255) tACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGa < 1:21159595/68‑1 (MQ=255) tACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGa > 1:26501158/1‑68 (MQ=255) aCGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGaa < 1:25093650/68‑1 (MQ=255) aCGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGaa > 1:7715493/1‑68 (MQ=255) aCGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGaa > 1:792201/1‑68 (MQ=255) aCGGGCGACAGTGAACAAGGCATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGaa > 1:27645601/1‑68 (MQ=255) cGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAAt > 1:23045690/1‑68 (MQ=255) cGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAAt < 1:6845587/68‑1 (MQ=255) ggCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATAc > 1:2910909/1‑68 (MQ=255) ggCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATAc > 1:25335391/1‑68 (MQ=255) ggCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATAc > 1:1111625/1‑68 (MQ=255) ggCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATAc > 1:26128773/1‑68 (MQ=255) aCAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCt > 1:25489729/1‑68 (MQ=255) gAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTc < 1:10540510/65‑1 (MQ=255) aCAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTc > 1:27206267/1‑67 (MQ=255) aGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCg > 1:24496938/1‑68 (MQ=255) ggATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGt > 1:8332108/1‑68 (MQ=255) ggATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGt > 1:20207022/1‑68 (MQ=255) ggATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGt > 1:13585316/1‑68 (MQ=255) ggATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGt > 1:7399687/1‑68 (MQ=255) ggATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGt > 1:9235912/1‑68 (MQ=255) ggATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGt > 1:3840769/1‑68 (MQ=255) ggATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGt > 1:25815394/1‑68 (MQ=255) gATTGATCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGt < 1:6578187/67‑1 (MQ=255) tcaggaggaatataacCACGCGCGCAACTCGCCTGTATGGGGCTGAATACGGCTTCTGTCGCCGGTAt < 1:10233172‑M1/52‑1 (MQ=255) gTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGaa > 1:20677749/1‑68 (MQ=255) gTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGaa > 1:14715485/1‑68 (MQ=255) tCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGaa > 1:11399542/1‑66 (MQ=255) tCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGaa > 1:4155330/1‑66 (MQ=255) tCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGaa > 1:21737327/1‑66 (MQ=255) tCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAAt < 1:15122196/67‑1 (MQ=255) gcctgACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATctgctg > 1:614187/1‑68 (MQ=255) gcctgACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATctgctg > 1:23346785/1‑68 (MQ=255) CACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGga > 1:10395120‑M1/1‑67 (MQ=255) CACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGga > 1:7131527‑M1/1‑67 (MQ=255) CACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGga > 1:578505‑M1/1‑67 (MQ=255) | TATATGGCAACGCGTGATGTCACATTTAATACGGGCGACAGTGAACAAGGGATTGTTCCCTGCCTGACACGCGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGAT > CP009273/4535174‑4535308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |