New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4583141 =	NA (NA)	7 (0.020)	5/90	NT	NA	intergenic (+12/+37)	tsr/yjjL	methyl‑accepting chemotaxis protein I, serine sensor receptor/L‑galactonate transporter
	?	CP009273	4583171 =	NA (NA)					intergenic (+42/+7)	tsr/yjjL	methyl‑accepting chemotaxis protein I, serine sensor receptor/L‑galactonate transporter

TCCTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4583218‑4583141 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatcgggcatAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCC  >  CP009273/4583171‑4583235                                                                                                                                                 TCCTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCT                                                                             >  1:18817883/1‑68  CCTGGTTCGTCAGCCGATCAACGCCCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTT                                                                            >  1:13191640/1‑68  CCTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTT                                                                            >  1:17183972/1‑68   CTGGTTCGTCCGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTA                                                                           >  1:24458572/1‑68   CTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTA                                                                           >  1:17775920/1‑68   CTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTA                                                                           >  1:14683612/1‑68   CTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTA                                                                           >  1:18082701/1‑68   CTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTA                                                                           >  1:28589497/1‑68   CTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTA                                                                           <  1:12893556/68‑1   CTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTA                                                                           >  1:24923141/1‑68   CTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTA                                                                           >  1:5158193/1‑68   CTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTA                                                                           >  1:10841035/1‑68   CTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTA                                                                           <  1:21774986/68‑1   CTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTA                                                                           <  1:10399213/68‑1    TGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTAT                                                                          <  1:4127597/68‑1     GGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTAgc                                                                         >  1:23456777/1‑66     GGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATC                                                                         >  1:16860151/1‑68     GGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATC                                                                         >  1:15854090/1‑68     GGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATC                                                                         >  1:17417398/1‑68     GGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATC                                                                         >  1:26876927/1‑68     GGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATC                                                                         >  1:28068815/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:17621241/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:18559649/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:19893719/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:21920417/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:24157876/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:20478737/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:2164275/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:17287571/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:27897674/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:28238848/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:2998305/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:11403563/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:6519178/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:6573509/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:7446956/1‑68       TTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:7797645/1‑68        TCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGG                                                                      <  1:26470592/68‑1        TCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGG                                                                      <  1:23060514/68‑1        TCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGG                                                                      <  1:7718042/68‑1        TCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGG                                                                      <  1:10152676/68‑1        TCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGG                                                                      <  1:14981423/68‑1        TCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:9707964/1‑67        TCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGG                                                                       >  1:13370613/1‑67        TCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCATATGCCCGATAACATTTTGCTTATCGGG                                                                      <  1:2804039/68‑1         CGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCGCGATAACATTTTGCTTATCGGG                                                                      <  1:751726/67‑1         CGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGGC                                                                     >  1:8951192/1‑68         CGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGGC                                                                     <  1:7594338/68‑1           TCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGGCAT                                                                   >  1:24318170/1‑68           TCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGGCAT                                                                   >  1:17427923/1‑68                       CGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGGCATAAGGAGATTAAT                                                       <  1:10097724/68‑1                       CGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGGCATAAGGAGATTAAT                                                       <  1:19753339/68‑1                       CGACCCACGTAAAGATTAATCTACTTATGCCCGATAACAATTTGCTTATCGGGCATAAGGAGATTAAT                                                       <  1:10858912/68‑1                           CCACGTAAAGATTAATCACCTTATGCCCGATAACATTTTGCTTATCGGGCATAAGGAGATTAATCTTT                                                   <  1:27210564/68‑1                                 AAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGGCATAAGGAGATTAATCTTTACGTGG                                             <  1:21855514/68‑1                                       TAATCTCCTTATGCCCGATAACATTTTGCTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTT                                       <  1:4350551/68‑1                                              CTTATCCCCGATACCATTTTGCTAAGCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGC                                <  1:8126459/68‑1                                                                     TATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACG          <  1:6063743/67‑1                                                                     TATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACG          <  1:21345585/67‑1                                                                     TATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACG          <  1:15734412/67‑1                                                                     TATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACG          <  1:2010804/67‑1                                                                      ataGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCC        >  1:8942577/4‑68                                                                      ATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCC        >  1:6136395/1‑68                                                                      ATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCC        >  1:24467013/1‑68                                                                      ATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCC        >  1:20941655/1‑68                                                                      ATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCC        <  1:3071252/68‑1                                                                      ATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCC        <  1:3322133/68‑1                                                                      ATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCC        >  1:3957355/1‑68                                                                      ATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTCGATCGGCTGACGAACCAGGAAGATGTACGCC        <  1:13238693/68‑1                                                                       TCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGTCTGACGAACCAGGAAGATGTACGCCA       >  1:28914731/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:23957902/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:12464468/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:11153257/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:6554969/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:10552616/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:7082910/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:19052026/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:21954111/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:7822946/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:20135151/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:17405672/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:3595268/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:12471112/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:28358620/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:9156665/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:9156680/1‑68                                                                        CGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAG      >  1:16744859/1‑68                                                                          GGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGT     >  1:25634582/1‑67                                                                          GGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGT     >  1:6689360/1‑67                                                                          GGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGT     >  1:4795289/1‑67                                                                          GGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGT     >  1:25544122/1‑67                                                                           GCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTG    <  1:22208154/67‑1                                                                           GCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTG    <  1:11097506/67‑1                                                                           GCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTG    <  1:124243/67‑1                                                                           GCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTG    <  1:4341349/67‑1                                                                            CATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGAT               <  1:12956321/55‑1                                                                             ATAAGGAGATTAATCTTTAGGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCC  <  1:16786584/67‑1                                                                             ATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCC  <  1:2124894/67‑1                                                                                                                                                 TCCTGGTTCGTCAGCCGATCAACGACCCACGTAAAGATTAATCTCCTTATGCCCGATAACATTTTGCTTATCGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4583218‑4583141 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatcgggcatAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCC  >  CP009273/4583171‑4583235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.