| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 254726 = | NA (NA) | 5 (0.020) | 4/94 | NT | NA | intergenic (+9/+30) | crl/phoE | RNA polymerase holoenzyme assembly factor crl/outer membrane phosphoporin protein E |
| ? | CP009273 | 254749 = | NA (NA) | intergenic (+32/+7) | crl/phoE | RNA polymerase holoenzyme assembly factor crl/outer membrane phosphoporin protein E | |||||
Only 100 of 397 total aligned reads displayed.
ATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCAT > CP009273/254659‑254793 | aTCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAAtgt < 1:20353999/68‑1 (MQ=255)aTCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAAtgt < 1:17953757/68‑1 (MQ=255)aTCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAAtgt < 1:25805042/68‑1 (MQ=255) acaaattgaatattaataatgatgatattgtcgcggttggcatgacgtatcagttttaatgaatatt < 1:15874797‑M1/1‑1 (MQ=255) caaattgaatattaataatgatgatattgtcgcggttggcatgacgtatcagttttaatgaatatTg < 1:2886261‑M1/2‑1 (MQ=255) caaattgaatattaataatgatgatattgtcgcggttggcatgacgtatcagttttaatgaatatTGc > 1:1542240‑M1/66‑68 (MQ=255) caaattgaatattaataatgatgatattgtcgcggttggcatgacgtatcagttttaatgaatatTGc > 1:10976609‑M1/66‑68 (MQ=255) attgaatattaataatgatgatattgtcgcggttggcatgacgtatcagttttaatgaatatTGCCgg < 1:16117971‑M1/6‑1 (MQ=255) aaGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCgg > 1:18965977/1‑68 (MQ=255) ttgaatattaataatgatgatattgtcgcggttggcatgacgtatcagttttaatgaatatTGCCGGa > 1:28547019‑M1/62‑68 (MQ=255) aGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCgg < 1:27747924/67‑1 (MQ=255) aGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCgg < 1:28149342/67‑1 (MQ=255) tgaatattaataatgattatattgtcgcggttggcatgacgtatcagttttaatgaatatTGCCGGAt > 1:4063433‑M1/61‑68 (MQ=255) tgaatattaataatgatgatattgtcgcggttggcatgacgtatcagttttaatgaatatTGCCGGAt > 1:4153200‑M1/61‑68 (MQ=255) tgaatattaataatgatgatattgtcgcggttggcatgacgtatcagttttaatgaatatTGCCGGAt > 1:21048650‑M1/61‑68 (MQ=255) tgaatattaataatgatgatattgtcgcggttggcatgacgtatcagttttaatgaatatTGCCGGAt > 1:17629894‑M1/61‑68 (MQ=255) gCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGAt > 1:11752281/1‑68 (MQ=255) tGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGAt < 1:20180172/66‑1 (MQ=255) tGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGAt < 1:12508897/66‑1 (MQ=255) tGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGc < 1:8493625/68‑1 (MQ=255) tGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGc < 1:20049985/68‑1 (MQ=255) ggAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCa < 1:12096071/68‑1 (MQ=255) ggAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCa < 1:22759102/68‑1 (MQ=255) ggAACCGGCGGAGGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCa < 1:27335650/68‑1 (MQ=255) aCCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATc > 1:6826878/1‑67 (MQ=255) aCCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATc > 1:17106700/1‑67 (MQ=255) ccGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATcac < 1:14098583/68‑1 (MQ=255) ccGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATcac < 1:7963326/68‑1 (MQ=255) cggcggATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATcaca < 1:29237912/68‑1 (MQ=255) cggcggATGATTTTCGTGACGAGCCGGGGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATcaca < 1:23425230/68‑1 (MQ=255) ggcggATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGATTGAAATGTGCCGGATGCATCACAt < 1:2570142/68‑1 (MQ=255) ggcggATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACAt < 1:775863/68‑1 (MQ=255) cggATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAACTGTGCCGGATGCATCACATc < 1:6511801/67‑1 (MQ=255) cggATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATcc > 1:28690652/1‑68 (MQ=255) ggATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCg < 1:18257408/68‑1 (MQ=255) ggATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCg < 1:22476531/68‑1 (MQ=255) ggATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCg < 1:26963300/68‑1 (MQ=255) ggATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCg < 1:15217616/68‑1 (MQ=255) ggATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCg < 1:12706525/68‑1 (MQ=255) tgatTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGc < 1:22932271/67‑1 (MQ=255) tgatTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGc < 1:5292976/67‑1 (MQ=255) tgatTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGc < 1:15134709/67‑1 (MQ=255) tgatTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGc < 1:19086076/67‑1 (MQ=255) tgatTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCa > 1:7136980/1‑68 (MQ=255) ttttCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAat < 1:11574049/67‑1 (MQ=255) ttttCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAat < 1:2219777/67‑1 (MQ=255) ttCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAatat > 1:11307418/1‑67 (MQ=255) cGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCa < 1:7450835/68‑1 (MQ=255) cGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCa < 1:2317053/68‑1 (MQ=255) cGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCa < 1:24625358/68‑1 (MQ=255) cGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCa < 1:27140929/68‑1 (MQ=255) cGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCa < 1:15733178/68‑1 (MQ=255) gACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTa > 1:2515476/1‑68 (MQ=255) cGAGCCGTTTTAGTTAACGGCGTTATTGATATGTGCCGGATTCATCACATCCGGCAATATTCATTaaa < 1:16909056/68‑1 (MQ=255) cGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTaaa > 1:4684377/1‑68 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:369890/66‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:6236375/66‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:3163966/66‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:10811163/66‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:9369823/66‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:13781264/66‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:19342572/66‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:19670837/66‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGa < 1:17375983/68‑1 (MQ=255) tGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATAc > 1:6590956/1‑68 (MQ=255) gAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACg < 1:9138936/68‑1 (MQ=255) gAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACg > 1:13399102/1‑68 (MQ=255) gAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACg < 1:21530085/68‑1 (MQ=255) gAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACg < 1:10524519/68‑1 (MQ=255) gAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACg < 1:24251398/68‑1 (MQ=255) aGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGt < 1:26711909/67‑1 (MQ=255) aGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGt < 1:27913805/67‑1 (MQ=255) aGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGt < 1:24982646/67‑1 (MQ=255) aGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGt < 1:22056232/67‑1 (MQ=255) ggCGTGAGTGAATTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCaa < 1:8227507/68‑1 (MQ=255) ggCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCaa < 1:14320269/68‑1 (MQ=255) ggCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCaa < 1:24065514/68‑1 (MQ=255) cGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAAc < 1:26590425/50‑1 (MQ=255) gtgagtgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAAcc < 1:20752306/67‑1 (MQ=255) gagtgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACcgcg < 1:18545981/68‑1 (MQ=255) gagtgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACcgcg < 1:11844129/68‑1 (MQ=255) gagtgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACcgcg < 1:8791558/68‑1 (MQ=255) gagtgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACcgcg < 1:19553341/68‑1 (MQ=255) gagtgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACcgcg < 1:26339514/68‑1 (MQ=255) gagtgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACcgcg < 1:23572692/68‑1 (MQ=255) gagtgaAATGTGCCGGATGCATCACATACGGCAATATTCATTAAAACTGATACGTCATGCCAACcgcg < 1:4555183/68‑1 (MQ=255) tgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACa > 1:10317713/1‑68 (MQ=255) gaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACaa < 1:25443427/68‑1 (MQ=255) gaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACaa < 1:14505647/68‑1 (MQ=255) aaTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAat < 1:5880678/67‑1 (MQ=255) aaTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAat < 1:22370918/67‑1 (MQ=255) aaTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAat < 1:1866043/67‑1 (MQ=255) aaTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAat < 1:13193884/67‑1 (MQ=255) aaTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAat < 1:13093468/67‑1 (MQ=255) aaTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAat < 1:9527881/67‑1 (MQ=255) aaTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATAAGTCATGCCAACCGCGACAat < 1:10109338/67‑1 (MQ=255) tgtgCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATatc > 1:27499029/1‑68 (MQ=255) tgtgCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATatc > 1:23759503/1‑68 (MQ=255) tgtgCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATatc > 1:16511555/1‑68 (MQ=255) TGCCTGATGCATCACATCCGGCAATATTCATTAAAACTTATACGTCATGCCAACCGCGACAATatcat > 1:4868887‑M1/1‑68 (MQ=255) | ATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCAT > CP009273/254659‑254793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |