| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 254726 = | NA (NA) | 5 (0.020) | 4/94 | NT | NA | intergenic (+9/+30) | crl/phoE | RNA polymerase holoenzyme assembly factor crl/outer membrane phosphoporin protein E |
| ? | CP009273 | 254749 = | NA (NA) | intergenic (+32/+7) | crl/phoE | RNA polymerase holoenzyme assembly factor crl/outer membrane phosphoporin protein E | |||||
Only 100 of 364 total aligned reads displayed.
TTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTA > CP009273/254684‑254816 | ttttCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAata < 1:8106091/68‑1 (MQ=255)ttttCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAat < 1:11574049/67‑1 (MQ=255) tttCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAatat < 1:2493870/68‑1 (MQ=255) cGTGACGAGCCGGTGAAGTTAACGGCGTGATTGAAATGTGCCGGATGCATCACATCCGGCAATATTCa < 1:15733158/68‑1 (MQ=255) cGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCa < 1:7450835/68‑1 (MQ=255) cGAGCCGTTTTAGTTAACGGCGTTATTGATATGTGCCGGATTCATCACATCCGGCAATATTCATTaaa < 1:16909056/68‑1 (MQ=255) cGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTaaa > 1:4684377/1‑68 (MQ=255) gAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTaaaa < 1:928655/68‑1 (MQ=255) ttggcatgacgtatcagttttaatgaatattgccggatgtgatgcatccggcaATATTCATTAAAAc < 1:10808327‑M2/14‑1 (MQ=255) gCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTaaa > 1:28729869/1‑65 (MQ=255) gCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAAc < 1:12042214/67‑1 (MQ=255) tggcatgacgtatcagttttaatgaatattgccggatgtgatgcatccggcaATATTCATTAAAACTg < 1:2861367‑M2/16‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:2223244/66‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:23762683/66‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:24221481/66‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:4190960/66‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:1253078/66‑1 (MQ=255) cGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGa < 1:23456696/68‑1 (MQ=255) gAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATAc < 1:26768975/67‑1 (MQ=255) gAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACg < 1:21530085/68‑1 (MQ=255) gAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACg < 1:5496845/68‑1 (MQ=255) gAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACg < 1:22181158/68‑1 (MQ=255) aGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGt < 1:6695045/67‑1 (MQ=255) aGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGt < 1:26711909/67‑1 (MQ=255) aGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTc > 1:24547819/1‑68 (MQ=255) aGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTc > 1:8572267/1‑68 (MQ=255) ttAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCAt > 1:15211936/1‑68 (MQ=255) ttAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCAt > 1:29233994/1‑68 (MQ=255) ggCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCaa < 1:14320269/68‑1 (MQ=255) ggCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCaa < 1:2241131/68‑1 (MQ=255) ggCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCa > 1:19394983/1‑67 (MQ=255) ggCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCa > 1:19048617/1‑67 (MQ=255) agttttaatgaatatTGCCGGATGCATCACAGCCGGCAATATTCATTAAAACTGATACGTCCTGCCaa < 1:13722175‑M1/53‑1 (MQ=255) gCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACt < 1:13109300/52‑1 (MQ=255) gCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCaa > 1:17172794/1‑67 (MQ=255) gCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCaa > 1:28032419/1‑67 (MQ=255) ttttaatgaatatTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAAcc < 1:15621226‑M1/55‑1 (MQ=255) cGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAAc < 1:29157909/67‑1 (MQ=255) gagtgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACcgcg < 1:2135704/68‑1 (MQ=255) gagtgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACcgcg < 1:7633916/68‑1 (MQ=255) gagtgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACcgcg < 1:26339514/68‑1 (MQ=255) gagtgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACcgcg < 1:18545981/68‑1 (MQ=255) gagtgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACcgcg < 1:26639906/68‑1 (MQ=255) gagtgaAATGTGCCGGATGCATCACATACGGCAATATTCATTAAAACTGATACGTCATGCCAACcgcg < 1:4555183/68‑1 (MQ=255) tgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCACCGGCGACa > 1:10948802/1‑68 (MQ=255) tgaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACa > 1:10317713/1‑68 (MQ=255) gaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACaa < 1:14505647/68‑1 (MQ=255) gaAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACa < 1:9463119/67‑1 (MQ=255) gaAATGTGCCGGATGCATCACATCAGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACaa < 1:12829506/68‑1 (MQ=255) aaTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAat < 1:5880678/67‑1 (MQ=255) aaTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAat < 1:4106581/67‑1 (MQ=255) aaTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAat < 1:28589696/67‑1 (MQ=255) aaTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATAAGTCATGCCAACCGCGACAat < 1:10109338/67‑1 (MQ=255) aTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAata > 1:22608252/1‑67 (MQ=255) aTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAata > 1:27143206/1‑67 (MQ=255) aTGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAata > 1:22920674/1‑67 (MQ=255) aTGTGCCGGATGCACCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAata > 1:2557237/1‑67 (MQ=255) tgtgCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATatc < 1:23222958/68‑1 (MQ=255) tgtgCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATatc > 1:25051725/1‑68 (MQ=255) tgtgCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATatc > 1:16511555/1‑68 (MQ=255) gtgCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATatca < 1:11781296/68‑1 (MQ=255) TGCCTGATGCATCACATCCGGCAATATTCATTAAAACTTATACGTCATGCCAACCGCGACAATatcat > 1:4868887‑M1/1‑68 (MQ=255) GCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATatcatc > 1:23683473‑M1/1‑68 (MQ=255) GCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATatcatc < 1:1813087‑M1/68‑1 (MQ=255) CCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATAtcatca < 1:3888670‑M1/68‑1 (MQ=255) CCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATAtcatca < 1:27627894‑M1/68‑1 (MQ=255) CGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATAtcatca > 1:26550113‑M1/1‑67 (MQ=255) CGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATcatcat < 1:23998791‑M1/68‑1 (MQ=255) GGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCatt > 1:14809940‑M1/1‑68 (MQ=255) GGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCatt > 1:3687969‑M1/1‑68 (MQ=255) GGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCatt > 1:17831966‑M1/1‑68 (MQ=255) GGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCAAACCGCGACAATATCATCatt > 1:10603731‑M1/1‑68 (MQ=255) atccATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCattat > 1:15919534/4‑68 (MQ=255) ATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCattat < 1:20600835‑M1/68‑1 (MQ=255) ATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCattat < 1:26135414‑M1/68‑1 (MQ=255) ATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCatta > 1:28401‑M1/1‑67 (MQ=255) ATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCatta > 1:13351498‑M1/1‑67 (MQ=255) ATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCatta > 1:7742951‑M1/1‑67 (MQ=255) ATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCatta > 1:13909717‑M1/1‑67 (MQ=255) TGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCattatt > 1:27917559‑M1/1‑68 (MQ=255) TGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCattatt > 1:13248095‑M1/1‑68 (MQ=255) TGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCattatt > 1:9035971‑M1/1‑68 (MQ=255) TGCATAACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCattatt > 1:11045992‑M1/1‑68 (MQ=255) GCATCACATCTGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCAttatta < 1:6919529‑M1/68‑1 (MQ=255) aTCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAat < 1:623605/68‑1 (MQ=255) tCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAata > 1:19761742/1‑68 (MQ=255) acaTCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAatat > 1:3301764/1‑67 (MQ=255) acaTCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAatat > 1:20104819/1‑67 (MQ=255) acaTCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATAtt < 1:21988267/68‑1 (MQ=255) atccggcaATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCa < 1:25240625‑M2/60‑1 (MQ=255) tccggcaATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCaa > 1:20819621‑M2/8‑68 (MQ=255) ccggcaATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAAt < 1:6521222‑M2/62‑1 (MQ=255) ccggcaATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAAt < 1:11390428‑M2/62‑1 (MQ=255) ccggcaATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAAt < 1:16117971‑M2/62‑1 (MQ=255) ccggcaATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAAt < 1:19187394‑M2/62‑1 (MQ=255) ggcaATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAAttt < 1:13870253‑M2/64‑1 (MQ=255) gcaATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTg > 1:8277957‑M2/4‑68 (MQ=255) caATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATcatcat > 1:17583172‑M2/3‑50 (MQ=255) caATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTg < 1:19654735‑M2/65‑1 (MQ=255) atatTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTa > 1:24650788/1‑68 (MQ=255) | TTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTA > CP009273/254684‑254816 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |