| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1834892 = | 342 (0.970) | 16 (0.050) | 6/100 | NT | 5.7% | coding (1169/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase |
| ? | CP009273 | 1834923 = | 229 (0.730) | coding (1200/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase | |||||
Only 100 of 392 total aligned reads displayed.
TATGTGGAAAGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCGTGTATGACGGCGGC > CP009273/1834827‑1834959 | gtgGAAAGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGcgcgcg > 1:4692565/1‑67 (MQ=255) gtgGAAAGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGcgcgcg > 1:4042427/1‑67 (MQ=255) ggAAAGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑Tc < 1:10018586/67‑1 (MQ=255) ggAAAGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑Tc < 1:5661835/67‑1 (MQ=255) aaGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCGGaa > 1:3910261/1‑68 (MQ=255) aaGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGaa > 1:1726108/1‑68 (MQ=255) aaGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGaa > 1:6312245/1‑68 (MQ=255) aaGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGaa > 1:4354366/1‑68 (MQ=255) aaGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGaa > 1:25864352/1‑68 (MQ=255) aGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGaa > 1:10286696/1‑67 (MQ=255) aGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGaa > 1:16540829/1‑67 (MQ=255) aGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGaa > 1:19868079/1‑67 (MQ=255) gCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGaaa > 1:28625287/1‑67 (MQ=255) gCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGaaa > 1:7339748/1‑67 (MQ=255) gCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGaaa > 1:8346517/1‑67 (MQ=255) gCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGaaa > 1:9733925/1‑67 (MQ=255) gCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGaaa > 1:16329704/1‑67 (MQ=255) gCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGaaa > 1:14126340/1‑67 (MQ=255) gTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAAcc < 1:26313615/67‑1 (MQ=255) gTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAAcc < 1:20910044/67‑1 (MQ=255) gTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAAcc < 1:25216188/67‑1 (MQ=255) gTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAAcc < 1:8530700/67‑1 (MQ=255) gTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAAcc < 1:11236047/67‑1 (MQ=255) gTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAAc < 1:12046232/66‑1 (MQ=255) gTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAAc < 1:19186317/66‑1 (MQ=255) gTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAAc < 1:881435/66‑1 (MQ=255) gTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAAc < 1:6798346/66‑1 (MQ=255) gTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCt < 1:16976107/68‑1 (MQ=255) ggAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCtt < 1:13290959/67‑1 (MQ=255) gAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTa > 1:6593309/1‑68 (MQ=255) atatCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTAt < 1:5760609/67‑1 (MQ=255) atatCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTAt < 1:2340759/67‑1 (MQ=255) atatCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTAt < 1:12801124/67‑1 (MQ=255) atatCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTAt < 1:25617766/67‑1 (MQ=255) atatCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTAt < 1:3719888/67‑1 (MQ=255) atCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TACGAAACCTATATGTa > 1:21361632/1‑68 (MQ=255) aaaCCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTacgc > 1:29173755/1‑68 (MQ=255) aCCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTacgcac > 1:15959008/1‑68 (MQ=255) aCCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTacgcac > 1:9450662/1‑68 (MQ=255) aCCAGAGCAGCAAGTTTCATTCTAATGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTacgcac > 1:1392106/1‑68 (MQ=255) ccAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTacgcac > 1:26170025/1‑67 (MQ=255) ccAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTacgcac > 1:14404186/1‑67 (MQ=255) ccAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTacgcac > 1:16907869/1‑67 (MQ=255) ccAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTacgcac > 1:11912406/1‑67 (MQ=255) gcagcaAGTTTCTTTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCAcgcg < 1:8973807/65‑1 (MQ=255) gcagcaAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCAcgcg < 1:12844849/65‑1 (MQ=255) gcagcaAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCAcgcg < 1:27748587/65‑1 (MQ=255) gcagcaAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCAcgcg < 1:13073086/65‑1 (MQ=255) gcagcaAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCAcgcg < 1:28839390/65‑1 (MQ=255) gcagcaAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCAcgcg < 1:26037482/65‑1 (MQ=255) gcagcaAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCAcgcg < 1:9113168/65‑1 (MQ=255) gcagcaAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCAcgcg < 1:24990128/65‑1 (MQ=255) gcagcaAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCAcgcg < 1:24397361/65‑1 (MQ=255) gcagcaAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGcc < 1:22369825/67‑1 (MQ=255) gcagcaAGTTTCAATCTACTGCTGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCAcgcg < 1:26758892/65‑1 (MQ=255) agcaAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATg > 1:15112365/1‑68 (MQ=255) aaGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATggg < 1:12642113/67‑1 (MQ=255) aaGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATggg < 1:17621543/67‑1 (MQ=255) aaGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATggg < 1:23600597/67‑1 (MQ=255) aaGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATggg < 1:348101/67‑1 (MQ=255) aaGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATggg < 1:22744718/67‑1 (MQ=255) aaGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGt > 1:20204924/1‑68 (MQ=255) aaGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGt > 1:20313274/1‑68 (MQ=255) aaGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGt > 1:20537787/1‑68 (MQ=255) aaGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGt < 1:2176874/68‑1 (MQ=255) aaGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGt > 1:27180980/1‑68 (MQ=255) aaGTTGCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATgg < 1:10848363/66‑1 (MQ=255) tCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGgaa > 1:2666576/1‑68 (MQ=255) acggaaacattcttccaacccatgGCGCGCGTCCGAAACCTTTATGTACGCACGCGCCATGGGTTGga < 1:8722786‑M1/44‑1 (MQ=255) acggaaacattcttccaacccatgGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGgaag < 1:12478119‑M1/44‑1 (MQ=255) aTTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGgaaga < 1:18685047/68‑1 (MQ=255) tCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGgaa < 1:24538590/64‑1 (MQ=255) tCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAAt < 1:28276197/68‑1 (MQ=255) tCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAAt > 1:14739245/1‑68 (MQ=255) tCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAAt < 1:7597424/68‑1 (MQ=255) aCTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGtt > 1:15550883/1‑68 (MQ=255) aCTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGtt < 1:13632445/68‑1 (MQ=255) aCTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGtt > 1:1845801/1‑68 (MQ=255) aCTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGtt > 1:22952565/1‑68 (MQ=255) cTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGttt < 1:11642054/68‑1 (MQ=255) tGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCCCGCGCCATGGGTTGGAAGAATGttt > 1:21159200/1‑67 (MQ=255) gCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTcc > 1:27069678/1‑68 (MQ=255) gCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTcc > 1:26951165/1‑68 (MQ=255) ggCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCgt > 1:27904693/1‑68 (MQ=255) ggCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCgt > 1:17803486/1‑68 (MQ=255) ggCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCgt > 1:27489838/1‑68 (MQ=255) ggCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCgt < 1:8482526/68‑1 (MQ=255) ggCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCgt < 1:8282600/68‑1 (MQ=255) ggCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCgt < 1:7418266/68‑1 (MQ=255) ggCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCgt < 1:19012013/68‑1 (MQ=255) ggCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACCCACGCGCCATGGCTAGGAAGAAAGTTTCCgt > 1:3063539/1‑68 (MQ=255) cACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCgtgt > 1:18029548/1‑68 (MQ=255) aCCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCgtgt < 1:24055693/67‑1 (MQ=255) ggCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCGTGTATGa < 1:13154844/68‑1 (MQ=255) cccatgGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCGTGTATGAc < 1:25414387‑M1/62‑1 (MQ=255) cccatgGCGCG‑‑GCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTGCCGTCTatgta < 1:5967050‑M1/62‑3 (MQ=255) cgcgcg‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCGTGTATGAcggcg > 1:23673500/1‑67 (MQ=255) cgcgcg‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTACCGTGTATGAcggcg > 1:22107049/1‑67 (MQ=255) GCGCG‑‑TCCGAAACCTTTATGTAGGCACGCGCGATGGGTTGGAAGAATGTTTCGGTGTATGAcggcg < 1:5096130‑M1/66‑1 (MQ=255) GCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCGTGTATGACggcggc > 1:6949505‑M1/1‑68 (MQ=255) | TATGTGGAAAGCGTGGAATATCAAACCAGAGCAGCAAGTTTCATTCTACTGCGGCACCGGCTGGCGCGCG‑‑TCCGAAACCTTTATGTACGCACGCGCCATGGGTTGGAAGAATGTTTCCGTGTATGACGGCGGC > CP009273/1834827‑1834959 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |