New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2499292352 (1.000)19 (0.060) 10/98 NT 5.6% coding (820/1086 nt) ypdF Xaa‑Pro aminopeptidase
?CP009273 = 2499321 338 (1.090)coding (791/1086 nt) ypdF Xaa‑Pro aminopeptidase

Only 100 of 534 total aligned reads displayed.

TGCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGC  >  CP009273/2499226‑2499358
                                                                  |                                                                  
tGCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   <  1:27823590/68‑1 (MQ=255)
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:28665867/1‑67 (MQ=255)
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:9357986/1‑67 (MQ=255)
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:5872187/1‑67 (MQ=255)
   cGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGcgcgcg                                                                <  1:7911732/68‑1 (MQ=255)
   cGATAGCGTGACCGGTGTTATGACCGAAATACTCGCCATAACCTGCTTCTGTAATGACCCGGcgcgcg                                                                >  1:18249382/1‑68 (MQ=255)
       aGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCAt                                                            <  1:13099717/68‑1 (MQ=255)
        gCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATc                                                           >  1:1573719/1‑68 (MQ=255)
        gCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATc                                                           >  1:2669600/1‑68 (MQ=255)
         cGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCg                                                          >  1:9089277/1‑68 (MQ=255)
          gTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCg                                                          <  1:23399805/67‑1 (MQ=255)
            gACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTc                                                        <  1:10869402/67‑1 (MQ=255)
             aCCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCa                                                       >  1:2267019/1‑67 (MQ=255)
              ccGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGtgcggtggcagcagg                                                     >  1:16657561‑M1/1‑53 (MQ=255)
              ccGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCaa                                                      >  1:18175514/1‑67 (MQ=255)
               cGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCaa                                                      >  1:2834361/1‑66 (MQ=255)
               cGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAAcc                                                    <  1:20015130/68‑1 (MQ=255)
               cGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAAcc                                                    <  1:26374262/68‑1 (MQ=255)
                  tgtTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACctg                                                  <  1:19122610/67‑1 (MQ=255)
                  tgtTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACctg                                                  <  1:1001142/67‑1 (MQ=255)
                     tATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACctgctg                                               >  1:26594630/1‑67 (MQ=255)
                     tATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACctgctg                                               >  1:21498904/1‑67 (MQ=255)
                       tGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:7720470/1‑68 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:8466520/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:1148088/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:12721499/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:3834935/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:2042595/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:12977536/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:27247660/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:4501337/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:4645823/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:28825586/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:29080273/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:18018429/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCACCCTGCTGGCAgc                                          >  1:4281668/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:19785632/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:11122394/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:24690978/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:18708044/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:15417292/1‑67 (MQ=255)
                              aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                     >  1:27306406‑M2/1‑66 (MQ=255)
                              aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAc                                      >  1:8401646‑M2/1‑66 (MQ=255)
                               aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                     <  1:271291‑M2/67‑3 (MQ=255)
                                tAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgcc                                   >  1:21662123‑M2/1‑64 (MQ=255)
                                   tCGCCATAACCTGCTTCTGTAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccggg                                >  1:17719751‑M1/1‑32 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgg                                 >  1:7529511‑M2/1‑60 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgg                                 >  1:10248111‑M2/1‑60 (MQ=255)
                                       cATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGa                            <  1:9559031/68‑1 (MQ=255)
                                         tAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAAt                          <  1:6154358/68‑1 (MQ=255)
                                            ccTGCTTCTGTAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacag                       >  1:25419136‑M1/1‑23 (MQ=255)
                                            ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                       >  1:21214625/1‑68 (MQ=255)
                                             cTGCTTCTGTAATGAGCCGGCGCGCGGCATCGTCAGCGTGCTGGCAGCGCACGCCGGGGCGAATcgcg                      >  1:5436068/1‑68 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacaga                      >  1:25819822‑M1/1‑22 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                      >  1:2702155‑M2/1‑51 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                      >  1:24229022/1‑68 (MQ=255)
                                                cTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                   >  1:16783986/1‑68 (MQ=255)
                                                cTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                   >  1:12483410/1‑68 (MQ=255)
                                                 ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgaga                  >  1:8913515/1‑68 (MQ=255)
                                                  tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                 >  1:24949703/1‑68 (MQ=255)
                                                  tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                 >  1:18528628/1‑68 (MQ=255)
                                                   cTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                <  1:23604723/68‑1 (MQ=255)
                                                    tGTAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggt               >  1:15898426‑M1/1‑15 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:19520294/68‑1 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:2523158/68‑1 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:6056938/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:17482054/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:6575914/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:6884592/1‑67 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcatttcagaagcaggttatggcg        >  1:10071591‑M1/1‑7 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        >  1:23291288‑M1/1‑7 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        <  1:13645269‑M1/67‑61 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        >  1:17204275‑M1/1‑7 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        >  1:20672556‑M1/1‑7 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        >  1:3538033‑M1/1‑7 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        <  1:3389025‑M1/67‑61 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCCCGCCGGGGCGACTCGCGGAGATTGCTGCGa         >  1:22536572/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:14969669/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:11991918/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:7260346/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:11509979/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:3098373/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:14026712/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:24838311/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:25540952/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:11304453/1‑66 (MQ=255)
                                                              cGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgact     <  1:527675‑M1/68‑64 (MQ=255)
                                                              cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg     <  1:8735822/68‑1 (MQ=255)
                                                              cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg     <  1:16485006/68‑1 (MQ=255)
                                                              cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCCAATCGCGGAGATTGCTGCGAGCtg     <  1:5113924/68‑1 (MQ=255)
                                                               ggCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactt    >  1:26237121‑M1/1‑4 (MQ=255)
                                                               ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt    <  1:3299437/68‑1 (MQ=255)
                                                               ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt    <  1:22167094/68‑1 (MQ=255)
                                                               ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAACCGCGGAGATTGCTGCGAGCtgt    <  1:28135507/68‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   <  1:10667854/67‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   <  1:17027643/67‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   >  1:27449241/1‑67 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactat   <  1:8196837‑M1/67‑66 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactat   <  1:16143429‑M1/67‑66 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactat   <  1:25961399‑M1/67‑66 (MQ=255)
                                                                  |                                                                  
TGCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGC  >  CP009273/2499226‑2499358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.