New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2499292352 (1.000)19 (0.060) 10/98 NT 5.6% coding (820/1086 nt) ypdF Xaa‑Pro aminopeptidase
?CP009273 = 2499321 338 (1.090)coding (791/1086 nt) ypdF Xaa‑Pro aminopeptidase

Only 100 of 418 total aligned reads displayed.

AATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACA  >  CP009273/2499256‑2499387
                                                                 |                                                                  
aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  >  1:28686634‑M2/1‑66 (MQ=255)
 aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:28265152‑M2/67‑3 (MQ=255)
 aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:8196837‑M2/67‑3 (MQ=255)
   aGTCGCCATACCCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccg                                                               <  1:23360080‑M2/68‑6 (MQ=255)
     tCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             <  1:6107817‑M2/68‑8 (MQ=255)
      cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             <  1:22581526‑M2/67‑8 (MQ=255)
      cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgg                                                              >  1:27328603‑M2/1‑60 (MQ=255)
         cATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGa                                                         <  1:9559031/68‑1 (MQ=255)
             aCCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATc                                                      >  1:28429967/1‑67 (MQ=255)
              ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    <  1:11281557/68‑1 (MQ=255)
              ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:17987154/1‑68 (MQ=255)
              ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:1667585/1‑68 (MQ=255)
               ctgctgctgTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                                                   >  1:8769790‑M2/1‑51 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                                                   >  1:7541602‑M2/1‑51 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                                                   >  1:5186450‑M2/1‑51 (MQ=255)
                tGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCgg                                                  <  1:5428803/68‑1 (MQ=255)
                 gCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGga                                                 >  1:17276972/1‑68 (MQ=255)
                   ttCTGTAATGCCCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                                                <  1:18135727/67‑1 (MQ=255)
                   ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                                                <  1:11150232/67‑1 (MQ=255)
                   ttCTGTAATGACCCGGCGCGCGGCAGCGTCACCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                                                <  1:7468503/67‑1 (MQ=255)
                    tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                                              >  1:14311886/1‑68 (MQ=255)
                      tGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacagaagcaggt                                            >  1:25418605‑M2/1‑44 (MQ=255)
                       gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc                                           <  1:19520294/68‑1 (MQ=255)
                       gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc                                           <  1:26311928/68‑1 (MQ=255)
                       gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc                                           <  1:21901626/68‑1 (MQ=255)
                         aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:19950304/1‑67 (MQ=255)
                         aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:10432199/1‑67 (MQ=255)
                         aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:6284415/1‑67 (MQ=255)
                         aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:4619278/1‑67 (MQ=255)
                           tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg                                       >  1:27077805/1‑68 (MQ=255)
                            gACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      <  1:22186174/68‑1 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacagaagcaggttatggcg                                     >  1:11505387‑M2/1‑36 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:4027426/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:24647280/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:3775158/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:24838311/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:26535466/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:1013477/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:18718481/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:14026712/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:14969669/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:15517110/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:15860845/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:16520358/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:17660806/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:19173878/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAg                                     <  1:3219779/67‑1 (MQ=255)
                                cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg                                  <  1:908208/68‑1 (MQ=255)
                                cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg                                  <  1:25830815/68‑1 (MQ=255)
                                 ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt                                 <  1:5637145/68‑1 (MQ=255)
                                 ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt                                 <  1:4786458/68‑1 (MQ=255)
                                 ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt                                 <  1:12947341/68‑1 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                >  1:20244773/1‑67 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:17027643/67‑1 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:10667854/67‑1 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:25262732/67‑1 (MQ=255)
                                      gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:11432489/67‑1 (MQ=255)
                                      gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:25745327/67‑1 (MQ=255)
                                      gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:13648387/67‑1 (MQ=255)
                                      gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:23999977/67‑1 (MQ=255)
                                      gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:13480734/67‑1 (MQ=255)
                                         gCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAg                         >  1:16903638/1‑68 (MQ=255)
                                           aTCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAgg                        <  1:3489482/67‑1 (MQ=255)
                                           aTCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAgg                        <  1:8045075/67‑1 (MQ=255)
                                           aTCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAgg                        <  1:18479498/67‑1 (MQ=255)
                                           aTCGTCAACCTGCGGGCAGCGCAcgccgggtcattacagaagcaggttatggcgactatttcggtca                        >  1:3307655‑M2/1‑23 (MQ=255)
                                             cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:6690469/68‑1 (MQ=255)
                                             cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:18207104/68‑1 (MQ=255)
                                             cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:12471999/68‑1 (MQ=255)
                                             cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:22134460/68‑1 (MQ=255)
                                             cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:20942442/68‑1 (MQ=255)
                                             cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:8392573/68‑1 (MQ=255)
                                              gTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACaa                    >  1:25952839/1‑68 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAtt                  >  1:20564971/1‑68 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAtt                  >  1:21446765/1‑68 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:25041239/67‑1 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:1741711/67‑1 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:5035302/67‑1 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:16305659/67‑1 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:9233759/67‑1 (MQ=255)
                                                 aaCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAttt                 <  1:13340714/68‑1 (MQ=255)
                                                 aaCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAttt                 <  1:27850036/68‑1 (MQ=255)
                                                  aCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGc                               >  1:12813333/1‑53 (MQ=255)
                                                  aCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTg                >  1:15374833/1‑68 (MQ=255)
                                                  aCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTg                >  1:11718332/1‑68 (MQ=255)
                                                   ccTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGa               >  1:22938571/1‑68 (MQ=255)
                                                   ccTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGa               >  1:2909136/1‑68 (MQ=255)
                                                   ccTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGa               >  1:16047166/1‑68 (MQ=255)
                                                    ctgctgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGAt              >  1:11830120/1‑68 (MQ=255)
                                                     tgctgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATa             >  1:4446996/1‑68 (MQ=255)
                                                      gctgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAg            >  1:7211245/1‑68 (MQ=255)
                                                        tgGCAGCGCTCGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:28110824/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:10031672/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:11939220/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:19671661/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:23559150/68‑1 (MQ=255)
                                                            aGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTa      >  1:8609436/1‑68 (MQ=255)
                                                             gcgcACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGCCGTTaa     >  1:12661209/1‑68 (MQ=255)
                                                             gcgcACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTaa     >  1:27195587/1‑68 (MQ=255)
                                                               gcACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGATAATTTGATAGACGTTaa     <  1:28779973/66‑1 (MQ=255)
                                                                 |                                                                  
AATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACA  >  CP009273/2499256‑2499387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.