New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2787742 =424 (1.200)27 (0.090) 10/96 NT 7.7% coding (131/1401 nt) gabP gamma‑aminobutyrate transporter
?CP009273 2787778 = 287 (0.950)coding (167/1401 nt) gabP gamma‑aminobutyrate transporter

Only 100 of 545 total aligned reads displayed.

TGTCTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCG  >  CP009273/2787676‑2787809
                                                                  |                                                                   
tgtCTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCggg                                                                     >  1:2673035/1‑67 (MQ=255)
tgtCTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCggg                                                                     >  1:22416423/1‑67 (MQ=255)
acgaaccggtatcgggcgtggcaacggccatttccgccaacatccgcataatcataaccaccagtag                                                                     <  1:17033222‑M1/1‑1 (MQ=255)
   cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcg                                                                 >  1:10706691/1‑68 (MQ=255)
   cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcg                                                                 >  1:16318965/1‑68 (MQ=255)
   cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcg                                                                 >  1:5837455/1‑68 (MQ=255)
   cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcg                                                                 >  1:20877269/1‑68 (MQ=255)
   cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcg                                                                 <  1:2098470/68‑1 (MQ=255)
   cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcg                                                                 >  1:23882067/1‑68 (MQ=255)
   cTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCCTCGCCATCGCCGAAGCGGGCCcg                                                                 >  1:23102426/1‑68 (MQ=255)
    accggtatcgggcgtggcaaccgccatttccgcgtacatccgcataatgataaccaccagtaGCCcgg                                                                >  1:9126363‑M1/63‑68 (MQ=255)
     ccggtatcgggcgtggcaaccgccatttccgccaacatccgcataatcataaccaccagtaGCCcggc                                                               <  1:9623792‑M1/7‑1 (MQ=255)
     aTTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggc                                                               >  1:2395281/1‑68 (MQ=255)
     aTTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggc                                                               <  1:13685859/68‑1 (MQ=255)
     aTTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggc                                                               >  1:22970746/1‑68 (MQ=255)
     aTTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggc                                                               >  1:1468798/1‑68 (MQ=255)
     aTTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggc                                                               >  1:21376159/1‑68 (MQ=255)
     aTTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggc                                                               >  1:11982471/1‑68 (MQ=255)
     aTTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggc                                                               >  1:19673228/1‑68 (MQ=255)
      ttGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggcg                                                              <  1:24299386/68‑1 (MQ=255)
      ttGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggcg                                                              <  1:1045158/68‑1 (MQ=255)
      ttGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggcg                                                              <  1:25233088/68‑1 (MQ=255)
      ttGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggcg                                                              <  1:26248900/68‑1 (MQ=255)
      ttGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggcg                                                              <  1:20454645/68‑1 (MQ=255)
      ttGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggcg                                                              <  1:12554652/68‑1 (MQ=255)
      ttGCCGGTGTGATCGGCGCACGTCTGTTTGTCGGTTCCAGCGTCGCCCTCGCCGAAGCGGGCCcggcg                                                              <  1:15441422/68‑1 (MQ=255)
      cggtatcgggcgtggcaaccgccatttccgccaacatccgcataatcataaccaccagtaGCCcggcg                                                              >  1:10992997‑M1/61‑68 (MQ=255)
      cggtatcgggcgtggcaaccgccatttccgccaacatccgcataatcataaccaccagtaGCCcggcg                                                              >  1:18289090‑M1/61‑68 (MQ=255)
        gcgggTGTTATCGGCGCAAGTCTGTTTGTGGGTTCCAGCGTCGCCATCGCCGAGGCGGGCCCGGCGGt                                                            >  1:6475956/4‑68 (MQ=255)
        gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt                                                            <  1:19541564/68‑1 (MQ=255)
        gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt                                                            <  1:21666789/68‑1 (MQ=255)
        gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt                                                            >  1:22023206/1‑68 (MQ=255)
        gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt                                                            <  1:16692289/68‑1 (MQ=255)
        gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt                                                            >  1:12127352/1‑68 (MQ=255)
        gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt                                                            >  1:7995835/1‑68 (MQ=255)
        gCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGt                                                            >  1:17640835/1‑68 (MQ=255)
          cGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTa                                                           <  1:3702564/67‑1 (MQ=255)
          cGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTa                                                           <  1:7895475/67‑1 (MQ=255)
          cGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTa                                                           <  1:25404468/67‑1 (MQ=255)
           ggTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTAtt                                                         <  1:25682878/68‑1 (MQ=255)
           ggTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTAtt                                                         <  1:7530218/68‑1 (MQ=255)
           ggTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTAtt                                                         <  1:23489504/68‑1 (MQ=255)
           ggTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTAtt                                                         <  1:8775316/68‑1 (MQ=255)
           ggTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTAtt                                                         <  1:9737954/68‑1 (MQ=255)
           ggTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTAtt                                                         <  1:19039568/68‑1 (MQ=255)
                tATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGTCGGTATTACTgg                                                    <  1:26532209/68‑1 (MQ=255)
                tATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTgg                                                    <  1:12877249/68‑1 (MQ=255)
                tATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTg                                                     <  1:2809612/67‑1 (MQ=255)
                 aTCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGc                                                   <  1:3418416/68‑1 (MQ=255)
                 aTCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGc                                                   <  1:22219154/68‑1 (MQ=255)
                 aTCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGc                                                   <  1:2911326/68‑1 (MQ=255)
                 aTCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGc                                                   <  1:12750970/68‑1 (MQ=255)
                   cGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCt                                                 >  1:4626441/1‑68 (MQ=255)
                   cGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCt                                                 >  1:6347175/1‑68 (MQ=255)
                     gcgcAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTa                                                >  1:28698713/1‑67 (MQ=255)
                      cgcAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTa                                                >  1:4950961/1‑66 (MQ=255)
                       gcAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCt                                             <  1:20101902/68‑1 (MQ=255)
                            tCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCcggcgg                                                             <  1:685489/47‑1 (MQ=255)
                            tCTGTTTGTCGGTTCCAGCGTCGCCATCGCAGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTc                                         >  1:27939847/1‑67 (MQ=255)
                              tGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGcc                                      <  1:4058967/68‑1 (MQ=255)
                                tttGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCTGTATTACTGGCCTATCTGTTCGCCgg                                    <  1:23331196/68‑1 (MQ=255)
                                 ttGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCggg                                   <  1:1726907/68‑1 (MQ=255)
                                 ttGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCggg                                   <  1:27806048/68‑1 (MQ=255)
                                 ttGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCggg                                   <  1:11604362/68‑1 (MQ=255)
                                   gTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCt                                 >  1:4216218/1‑68 (MQ=255)
                                     cGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTAc                               <  1:7152289/68‑1 (MQ=255)
                                     cGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTAc                               <  1:10050517/68‑1 (MQ=255)
                                     cGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTAc                               <  1:15757332/68‑1 (MQ=255)
                                     cGGTTCCAGCGGCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTAc                               <  1:24146763/68‑1 (MQ=255)
                                      ggTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCt                                 >  1:17985830/1‑65 (MQ=255)
                                      ggTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCt                                 >  1:17372607/1‑65 (MQ=255)
                                         tCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtgg                            <  1:13952023/67‑1 (MQ=255)
                                           cAGCGTCGCCATCGCCGAAGCGGGCCCGTCGGTATTACTGGCCTATCTGTTCGCCGGGCCACtggtgg                         <  1:5473476/68‑1 (MQ=255)
                                           cAGCGTCGCCATCGCCGAAGCGGGCCCGGTGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg                         <  1:12258666/68‑1 (MQ=255)
                                           cAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg                         <  1:20690827/68‑1 (MQ=255)
                                           cAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg                         <  1:24642100/68‑1 (MQ=255)
                                           cAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg                         <  1:28423771/68‑1 (MQ=255)
                                           cAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg                         <  1:25955662/68‑1 (MQ=255)
                                           cAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg                         <  1:3005776/68‑1 (MQ=255)
                                           cAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACtggtgg                         <  1:24884986/68‑1 (MQ=255)
                                              cGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTa                      >  1:1657274/1‑68 (MQ=255)
                                               gTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTggtggt                        <  1:8472816/65‑1 (MQ=255)
                                               gTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGtt                       <  1:28862929/66‑1 (MQ=255)
                                               ataatcataaccaccagtaGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACGGGGGGTTAt                     <  1:16249888‑M1/49‑1 (MQ=255)
                                                ccGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTA‑CTGTTCGCCGGGCTACTGGTGGTTATg                    <  1:14367371/66‑1 (MQ=255)
                                                 cGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATg                    <  1:11210570/67‑1 (MQ=255)
                                                  gCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGAt                  <  1:1610938/68‑1 (MQ=255)
                                                     aTCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTAt               <  1:19172798/68‑1 (MQ=255)
                                                     aTCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTAt               <  1:22772196/68‑1 (MQ=255)
                                                         ccaccagtaGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCgg           <  1:21090917‑M1/59‑1 (MQ=255)
                                                          cGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCgg           <  1:26890531/67‑1 (MQ=255)
                                                          cGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGa          >  1:1527320/1‑68 (MQ=255)
                                                           gAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGAt         <  1:9381638/68‑1 (MQ=255)
                                                           accagtaGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGAt         <  1:27567163‑M1/61‑1 (MQ=255)
                                                              gCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGtt      >  1:18592943/1‑68 (MQ=255)
                                                              agtaGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGtt      <  1:13437275‑M1/64‑1 (MQ=255)
                                                                taGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTg     <  1:23589891‑M1/65‑1 (MQ=255)
                                                                taGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTg     <  1:5120837‑M1/65‑1 (MQ=255)
                                                                 aGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGc   <  1:20669122‑M1/67‑1 (MQ=255)
                                                                 aGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGc   <  1:27023007‑M1/67‑1 (MQ=255)
                                                                  |                                                                   
TGTCTATTGCCGGTGTTATCGGCGCAAGTCTGTTTGTCGGTTCCAGCGTCGCCATCGCCGAAGCGGGCCCGGCGGTATTACTGGCCTATCTGTTCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCG  >  CP009273/2787676‑2787809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.