| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 253 | 321 (0.910) | 18 (0.060) | 8/92 | NT | 5.6% | coding (64/66 nt) | thrL | thr operon leader peptide |
| ? | CP009273 | = 278 | 338 (1.170) | intergenic (+23/‑59) | thrL/thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 | |||||
Only 100 of 764 total aligned reads displayed.
ATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGG > CP009273/186‑320 | tCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTg > 1:6556029/1‑68 (MQ=255) ccATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGa < 1:9746373/68‑1 (MQ=255) aTGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGAcg < 1:1694009/68‑1 (MQ=255) aTGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGAcg < 1:8756334/68‑1 (MQ=255) tGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGAcgc > 1:11009940/1‑68 (MQ=255) tGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGAcgc > 1:937756/1‑68 (MQ=255) tGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGAcgc > 1:1619940/1‑68 (MQ=255) tGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGAcgc > 1:26931763/1‑68 (MQ=255) aaCGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGt > 1:12160709/1‑67 (MQ=255) aaCGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGt < 1:12515053/67‑1 (MQ=255) aaCGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGt < 1:15503803/67‑1 (MQ=255) aCGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTAc > 1:10001529/1‑68 (MQ=255) aCGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTAc > 1:14423691/1‑68 (MQ=255) aCGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTAc > 1:8517146/1‑68 (MQ=255) aCGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTAc < 1:13542564/68‑1 (MQ=255) cGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACa > 1:8108740/1‑68 (MQ=255) cGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACa > 1:14804772/1‑68 (MQ=255) cGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACa > 1:21963015/1‑68 (MQ=255) gCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAg < 1:19674799/68‑1 (MQ=255) gCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAg > 1:7367016/1‑68 (MQ=255) ttAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGaa < 1:17907661/68‑1 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:21416695/1‑68 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:21122500/1‑68 (MQ=255) accaccATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAAcaca > 1:25096257/1‑68 (MQ=255) tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:4883471‑M2/1‑66 (MQ=255) tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:889501‑M2/1‑66 (MQ=255) tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:23955694‑M2/1‑66 (MQ=255) tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:947892‑M2/1‑66 (MQ=255) tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAa < 1:4724146‑M2/67‑2 (MQ=255) tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAa < 1:16474819‑M2/67‑2 (MQ=255) tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAa < 1:26562440‑M2/67‑2 (MQ=255) ccaccaccaTCACCATTACCACAGGTCACGGTGCGGGCTGCCGCGTACAGGAACCACAGAAAAAagc < 1:22656333‑M2/67‑4 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:5694543‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:17712508‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:18907‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:17153983‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:28863378‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:7833563‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGAGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:21818598‑M2/68‑6 (MQ=255) accaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:13375984‑M2/67‑6 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:18634534‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc < 1:3927129‑M2/68‑8 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:25716463‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:26425896‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:19370359‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:7718080‑M2/1‑61 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac > 1:22842304‑M2/1‑59 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:28586118‑M2/67‑9 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:7071445‑M2/67‑9 (MQ=255) catcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:21662814‑M2/65‑9 (MQ=255) accatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACa > 1:12744679/1‑68 (MQ=255) ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg > 1:6801650/1‑68 (MQ=255) catTACCACAGGTAACGGTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcacctga > 1:8262255‑M1/1‑26 (MQ=255) catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt > 1:22258123/1‑68 (MQ=255) catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt > 1:3252055/1‑68 (MQ=255) tACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtg > 1:19810543‑M2/1‑48 (MQ=255) tACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtg > 1:24494747‑M2/1‑48 (MQ=255) aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:5237621/1‑68 (MQ=255) aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:3107620/1‑68 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:8014324/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:1881300/1‑66 (MQ=255) acaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCt > 1:27421283/1‑68 (MQ=255) gTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttt > 1:10161917/1‑68 (MQ=255) tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttt > 1:18170005/1‑68 (MQ=255) tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttt < 1:14619637/65‑1 (MQ=255) tAACGGTGCGCGCAGACCCGTACAGGAAACACAGAAAAAagccagcaccgttacctgtggtaatg > 1:19092001‑M2/1‑39 (MQ=255) aaCGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtggtaatggtg > 1:1198131‑M2/1‑38 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGa > 1:25851681/1‑49 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttt > 1:3454503/1‑67 (MQ=255) ggTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgtttcctgtgggaatggtgatgg > 1:20734263‑M1/1‑10 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc > 1:9223609/1‑68 (MQ=255) gTGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggt > 1:23537288‑M1/1‑9 (MQ=255) gTGCGGGCTGACGCGTACAGGACACACAGAAAAAAGCCAGCGCCTGACTGTGCGGGCTTTTTTTGTCg > 1:11822450/1‑68 (MQ=255) gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg > 1:14979140/1‑68 (MQ=255) tGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggt < 1:13964772‑M1/67‑60 (MQ=255) tGCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatgg < 1:16398569‑M1/66‑59 (MQ=255) tGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg > 1:25397250/1‑67 (MQ=255) tGCGGGCTGACCCGTACAGGAAACCCAGAAAAAcgcccgcaccgttacctgtggtaatggtgatggt > 1:4293800‑M2/1‑33 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgccccgttacctgtggtaatggtgatggtgg > 1:11494938‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:13719284‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:5923854‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:3738128‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtgg > 1:27224614‑M1/1‑7 (MQ=255) gCGGGCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatcgtgatggtg < 1:5563747‑M1/67‑61 (MQ=255) gCGGGCTGACGCGTACAGGAAACGCAGAAAAAAGCCCGCACCTGACAGTTCGGGCTTTTTTTTTCGa > 1:12994737/1‑67 (MQ=255) gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGa > 1:28355763/1‑67 (MQ=255) gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGa > 1:28031476/1‑67 (MQ=255) gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGAc < 1:15315576/68‑1 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:1745179‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:7911419‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:7659969‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:28744080‑M1/68‑64 (MQ=255) gggCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtg < 1:29058990‑M1/68‑64 (MQ=255) gCTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtgg < 1:23298203‑M1/67‑65 (MQ=255) cTtttttctgtgtttcctgtacgcgtcagcccgcaccgttacctgtggtaatggtgatggtggtggta > 1:2093131‑M1/1‑2 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCaaa < 1:6223059/67‑1 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg > 1:20405964/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg > 1:26280508/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg > 1:10687642/1‑68 (MQ=255) tGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg < 1:11185566/67‑1 (MQ=255) | ATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGG > CP009273/186‑320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |