New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 253321 (0.910)18 (0.060) 8/92 NT 5.6% coding (64/66 nt) thrL thr operon leader peptide
?CP009273 = 278 338 (1.170)intergenic (+23/‑59) thrL/thrA thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1

Only 100 of 570 total aligned reads displayed.

TACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGT  >  CP009273/213‑346
                                                                 |                                                                    
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag                                                                    >  1:97583‑M2/1‑66 (MQ=255)
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag                                                                    >  1:25825572‑M2/1‑66 (MQ=255)
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag                                                                    >  1:3452593‑M2/1‑66 (MQ=255)
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag                                                                    >  1:5612187‑M2/1‑66 (MQ=255)
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag                                                                    >  1:13447260‑M2/1‑66 (MQ=255)
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAa                                                                     <  1:319450‑M2/67‑2 (MQ=255)
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAa                                                                     <  1:8008670‑M2/67‑2 (MQ=255)
tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAa                                                                     <  1:26562440‑M2/67‑2 (MQ=255)
 accaccaccATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc                                                                   >  1:26324984‑M2/1‑65 (MQ=255)
  ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc                                                                   <  1:24720058‑M2/67‑4 (MQ=255)
  ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc                                                                   <  1:9391162‑M2/67‑4 (MQ=255)
  ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc                                                                   <  1:23298203‑M2/67‑4 (MQ=255)
   caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTATAGGAAACACAGAAAAAagccc                                                                 <  1:28880153‑M2/68‑6 (MQ=255)
   caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                 <  1:18656787‑M2/68‑6 (MQ=255)
   caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc                                                                 <  1:20895589‑M2/68‑6 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                               >  1:7718080‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                               >  1:13580938‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                               >  1:27224614‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                               >  1:6732590‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                               >  1:6555338‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                               >  1:19781293‑M2/1‑61 (MQ=255)
     ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc                                                               <  1:11110446‑M2/68‑8 (MQ=255)
       accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac                                                             >  1:23586604‑M2/1‑59 (MQ=255)
       accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac                                                             >  1:3760945‑M2/1‑59 (MQ=255)
         catcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccg                                                           >  1:5780544‑M2/1‑57 (MQ=255)
         catcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccg                                                           >  1:3590247‑M2/1‑57 (MQ=255)
         catcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCt                                                           <  1:13774076/68‑1 (MQ=255)
            caccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTgcc                                                        >  1:9213566/1‑66 (MQ=255)
            caccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGAc                                                        >  1:9247087/1‑68 (MQ=255)
             accatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACa                                                       >  1:12239222/1‑68 (MQ=255)
              ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg                                                      >  1:1701439/1‑68 (MQ=255)
               catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGa                                                         >  1:7036774/1‑64 (MQ=255)
               catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt                                                     >  1:5170894/1‑68 (MQ=255)
               catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt                                                     >  1:6025242/1‑68 (MQ=255)
                  tACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtg                                                  >  1:7859975‑M2/1‑48 (MQ=255)
                   aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                 >  1:11900623/1‑68 (MQ=255)
                   aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                 >  1:29026525/1‑68 (MQ=255)
                    ccACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAACGCCCGCACCTGACAGTGCggg                                                <  1:14692284/68‑1 (MQ=255)
                    ccACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCCCCTGCCAGTGCgg                                                 >  1:20711176/1‑67 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGCCGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                 >  1:8698038/1‑66 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCCCCTGACAGTGCgg                                                 >  1:22835202/1‑66 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGCCAGTGCgggg                                               >  1:23997020/1‑67 (MQ=255)
                     cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg                                                 >  1:19487655/1‑66 (MQ=255)
                      acaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCt                                              >  1:27421283/1‑68 (MQ=255)
                      acaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCt                                              >  1:2864506/1‑68 (MQ=255)
                      acaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCt                                              >  1:5001453/1‑68 (MQ=255)
                        aGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttt                                            >  1:2111774/1‑68 (MQ=255)
                          gTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttt                                          >  1:16448616/1‑68 (MQ=255)
                          gTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttt                                          >  1:4486815/1‑68 (MQ=255)
                          gTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttt                                          >  1:21440644/1‑68 (MQ=255)
                            tcaggtgcGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcaccgttacctgtggtaatg                                            >  1:8262255‑M2/4‑38 (MQ=255)
                             caggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttt                                       >  1:12667249/3‑68 (MQ=255)
                              cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCtttttttt                                       >  1:480767/1‑67 (MQ=255)
                               ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCttttttttt                                      >  1:11410275/1‑67 (MQ=255)
                               ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc                                     >  1:2519871/1‑68 (MQ=255)
                               ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc                                     >  1:29217773/1‑68 (MQ=255)
                               ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTc                                     >  1:21870122/1‑68 (MQ=255)
                               ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCGTTTTTTTTc                                     >  1:1446727/1‑68 (MQ=255)
                                gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg                                    >  1:12894507/1‑68 (MQ=255)
                                gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg                                    >  1:15697914/1‑68 (MQ=255)
                                gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg                                    >  1:14879817/1‑68 (MQ=255)
                                gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg                                    >  1:18829818/1‑68 (MQ=255)
                                gTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCg                                    >  1:19232826/1‑68 (MQ=255)
                                  gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGa                                   >  1:28031476/1‑67 (MQ=255)
                                  gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGa                                   >  1:3952358/1‑67 (MQ=255)
                                  gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGAc                                  <  1:7522472/68‑1 (MQ=255)
                                  gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGAc                                  <  1:10156336/68‑1 (MQ=255)
                                  gCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGAc                                  <  1:15315576/68‑1 (MQ=255)
                                       ctcaCGCGAACAGCAAACACACAAAAAACCCCCCACCTGACAGTGCGGGCTTTTTTTTTCGACCaaa                              <  1:20398630/64‑1 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGCCCAAAg                             >  1:22642771/1‑68 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                             >  1:28332141/1‑68 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                             >  1:18144397/1‑68 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                             >  1:85034/1‑68 (MQ=255)
                                       cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                             >  1:10687642/1‑68 (MQ=255)
                                        tGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAg                             <  1:14098789/67‑1 (MQ=255)
                                         gACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGt                           <  1:54144/68‑1 (MQ=255)
                                           cgcgTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTa                          >  1:27747658/1‑67 (MQ=255)
                                              gTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACg                       <  1:25531125/67‑1 (MQ=255)
                                              gTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGa                      <  1:15188552/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:19924591/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:8096537/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:21982647/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:8896668/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:26827201/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:12805839/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:7294870/68‑1 (MQ=255)
                                                aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAgg                    <  1:12048975/68‑1 (MQ=255)
                                                     aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGt                   <  1:11663164/64‑1 (MQ=255)
                                                     aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTaaca               >  1:16316742/1‑68 (MQ=255)
                                                     aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTaaca               >  1:17546008/1‑68 (MQ=255)
                                                     aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTCGACCAAAGGTAATGAGGTaaca               >  1:18537470/1‑67 (MQ=39)
                                                       acacAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTaacaac             <  1:26042120/68‑1 (MQ=255)
                                                        cacaGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGCCCTAAGGTAACGAGGTAACAAcc            >  1:16174590/1‑68 (MQ=255)
                                                        cacaGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc            >  1:13172054/1‑68 (MQ=255)
                                                        cacaGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc            >  1:17828911/1‑68 (MQ=255)
                                                         acaGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCa           >  1:24356438/1‑68 (MQ=255)
                                                            gAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGc        >  1:21716492/1‑68 (MQ=255)
                                                              aaaaaGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGa      >  1:10024442/1‑68 (MQ=255)
                                                                aaaGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAgt    <  1:4186552/68‑1 (MQ=255)
                                                                aaaGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAgt    <  1:19035560/68‑1 (MQ=255)
                                                                 |                                                                    
TACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGT  >  CP009273/213‑346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.