| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2000783 | 291 (0.820) | 20 (0.070) | 9/96 | NT | 6.3% | coding (1147/1488 nt) | amyA | cytoplasmic alpha‑amylase |
| ? | CP009273 | = 2000836 | 344 (1.140) | coding (1200/1488 nt) | amyA | cytoplasmic alpha‑amylase | |||||
Only 100 of 420 total aligned reads displayed.
TCGGTGGTGACGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGCCTTTA > CP009273/2000769‑2000903 | ggtgACGGGGAAACCTATCCGATATATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCgcccg > 1:24878811‑M2/1‑63 (MQ=255) ggtgACGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCgcccg > 1:1890179‑M2/1‑63 (MQ=255) ggtgACGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCgcccg > 1:29180553‑M2/1‑63 (MQ=255) gtgACGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCgcccg < 1:27894930‑M2/67‑6 (MQ=255) cGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGc > 1:11154583/1‑68 (MQ=255) gggCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCg < 1:29233238/68‑1 (MQ=255) gggCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCg < 1:15334696/68‑1 (MQ=255) aaCCTATCCTATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCg < 1:22272699/68‑1 (MQ=255) aaCCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCg < 1:28632372/68‑1 (MQ=255) aaCCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCg < 1:23576539/68‑1 (MQ=255) aCCTATCCGATAGATATGCCAATAATCGACCACCTTGATGAGTTAATTCTCgcccgtcaccaccgaca > 1:5438344‑M2/1‑51 (MQ=255) cTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGccc > 1:21250015/1‑68 (MQ=255) cTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTAAATTCTCgcccgtcaccaccgacatc > 1:21546834‑M2/1‑49 (MQ=255) aTCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCAc < 1:9498856/68‑1 (MQ=255) aTCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCAc < 1:22629898/68‑1 (MQ=255) aTCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCAc < 1:6665269/68‑1 (MQ=255) aTCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCAc < 1:8429140/68‑1 (MQ=255) ccGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACgg < 1:21411644/68‑1 (MQ=255) ccGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACgg < 1:27733041/68‑1 (MQ=255) ccGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACgg > 1:15950264/1‑68 (MQ=255) ccGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACgg < 1:16528211/68‑1 (MQ=255) ccGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACgg < 1:25726450/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:2326954/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:21627444/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:27370278/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:25198852/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:20098049/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:301785/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:18259429/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:18721181/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:10536069/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:13802685/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:14049733/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:1796920/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:4675704/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:5113098/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:15667113/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:628181/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:4559866/68‑1 (MQ=255) cGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgt < 1:17593712/68‑1 (MQ=255) gatagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtg < 1:16479784/68‑1 (MQ=255) gatagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtg < 1:5930471/68‑1 (MQ=255) gatagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtg < 1:19640165/68‑1 (MQ=255) gatagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtg < 1:7280263/68‑1 (MQ=255) gatagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtg < 1:14213183/68‑1 (MQ=255) gatagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtg < 1:28526813/68‑1 (MQ=255) tagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtgt < 1:8792120/67‑1 (MQ=255) tagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtgt < 1:12097899/67‑1 (MQ=255) tagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtgt < 1:268931/67‑1 (MQ=255) tagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtgt < 1:28366269/67‑1 (MQ=255) tagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtgt < 1:155368/67‑1 (MQ=255) tagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtgt < 1:16746230/67‑1 (MQ=255) tagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtgt < 1:3568058/67‑1 (MQ=255) tagataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGgtgt < 1:4319077/67‑1 (MQ=255) agataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTAc > 1:14922327/1‑68 (MQ=255) agataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTAc > 1:26028227/1‑68 (MQ=255) agataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTAc > 1:8044114/1‑68 (MQ=255) agataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTAc > 1:26327341/1‑68 (MQ=255) agataTGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGAGTTTCGCCCACGGTGTAc > 1:22208145/1‑68 (MQ=255) atatGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAg > 1:23938971/1‑68 (MQ=255) tatGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACa < 1:16963984/66‑1 (MQ=255) tatGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAg > 1:10152919/1‑67 (MQ=255) tGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACg > 1:12444411/1‑68 (MQ=255) tGCCAATAATCGAACAGCTTGATGAGTTAATTCACgcccgtcaccaccgacatcttcgtaatgcgcac > 1:9354889‑M2/1‑35 (MQ=255) ccAATAATCGCACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCTCGGTGTACAGACGtt > 1:28800769/1‑68 (MQ=255) cAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTa > 1:26751075/1‑68 (MQ=255) ataatCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAtt < 1:24656563/68‑1 (MQ=255) ataatCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAtt < 1:12252993/68‑1 (MQ=255) ataatCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAtt < 1:1035718/68‑1 (MQ=255) taatCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAttt > 1:24501671/1‑68 (MQ=255) atCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAttttt > 1:21985014/1‑68 (MQ=255) atCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAtttt > 1:9123871/1‑67 (MQ=255) atCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAtttt > 1:3892816/1‑67 (MQ=255) atCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTAttta > 1:3319537/1‑66 (MQ=255) aCAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGAcc > 1:29035429/1‑68 (MQ=255) aCAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGAcc > 1:2310253/1‑68 (MQ=255) aCAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGAcc > 1:6959725/1‑68 (MQ=255) aCAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGAcc > 1:4800536/1‑68 (MQ=255) ttGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGCCCATCCg > 1:25448211/1‑68 (MQ=255) ttGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCa < 1:13516858/64‑1 (MQ=255) ttGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATc < 1:1727093/66‑1 (MQ=255) tgatgaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGa < 1:17177809/68‑1 (MQ=255) tgatgaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGa < 1:13236678/68‑1 (MQ=255) tgatgaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGa < 1:20724998/68‑1 (MQ=255) tgaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACt < 1:22516117/68‑1 (MQ=255) gaGTTAATTCTCGTCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACt > 1:13033910/1‑67 (MQ=255) gaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACt > 1:19866556/1‑67 (MQ=255) gaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACt > 1:21042810/1‑67 (MQ=255) gaGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTg < 1:5007587/68‑1 (MQ=255) gTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGc < 1:5721516/67‑1 (MQ=255) aTTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGc < 1:27553563/68‑1 (MQ=255) ttCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGcc < 1:26518832/68‑1 (MQ=255) ttCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGcc < 1:12780973/68‑1 (MQ=255) ttCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGAAAATCCGAACTGCATTg > 1:7683407/1‑66 (MQ=255) tctcGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGCCt > 1:10048270/1‑68 (MQ=255) tctcGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGCCt > 1:14580078/1‑68 (MQ=255) tctcGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGCCt > 1:19343059/1‑68 (MQ=255) ctcGCCCGTCAGCGTTTCGCCCCCGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGCCtt > 1:11693649/1‑68 (MQ=255) ctcGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGCCtt > 1:20373522/1‑68 (MQ=255) ctcGCCCGTCAGCGTTTCGCCCACGGGGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGCCtt > 1:10730245/1‑68 (MQ=255) | TCGGTGGTGACGGGCAAACCTATCCGATAGATATGCCAATAATCGAACAGCTTGATGAGTTAATTCTCGCCCGTCAGCGTTTCGCCCACGGTGTACAGACGTTATTTTTCGACCATCCGAACTGCATTGCCTTTA > CP009273/2000769‑2000903 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |