| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2067468 | 263 (0.740) | 12 (0.040) | 9/96 | NT | 5.7% | coding (2449/3120 nt) | flu | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| ? | CP009273 | = 2067481 | 170 (0.560) | coding (2462/3120 nt) | flu | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter | |||||
Only 100 of 442 total aligned reads displayed.
GCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGT > CP009273/2067414‑2067547 | gctgctGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGgatga > 1:10335289/1‑68 (MQ=255)gctgctGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGgatga > 1:5589020/1‑68 (MQ=255)gctgctGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGgatga > 1:24674293/1‑68 (MQ=255)gctgctGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGgatga < 1:25757512/68‑1 (MQ=255) tgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGAt < 1:26712184‑M2/67‑2 (MQ=255) tgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGAt > 1:18773140‑M2/1‑66 (MQ=255) tgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGAt > 1:14242448‑M2/1‑66 (MQ=255) tgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGAt > 1:5204290‑M2/1‑66 (MQ=255) tgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGAt > 1:16437744‑M2/1‑66 (MQ=255) tgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGAt < 1:4290898‑M2/67‑2 (MQ=255) tgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGAt > 1:28474103‑M2/1‑66 (MQ=255) tgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGAtgccg < 1:19201472‑M2/68‑6 (MQ=255) cATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAg < 1:9038287/68‑1 (MQ=255) cATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAg < 1:7891857/68‑1 (MQ=255) cATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAg < 1:20116556/68‑1 (MQ=255) cATTCTTCCGATGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAg < 1:20380379/68‑1 (MQ=255) aTTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGc < 1:21852323/68‑1 (MQ=255) aTTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCCGGATGATGCCGGCAg > 1:385171/1‑67 (MQ=255) cttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTg > 1:24860041/1‑68 (MQ=255) tcCGTTGATGTTAAGGCTGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGAtgccggcacgggagc > 1:1718386‑M2/1‑53 (MQ=255) tcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTgg > 1:13131923/1‑67 (MQ=255) gTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCgg < 1:15866517/68‑1 (MQ=255) aTGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATa > 1:7171849/1‑67 (MQ=255) tGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATAc < 1:13658895/67‑1 (MQ=255) tGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATAc < 1:684632/67‑1 (MQ=255) agattcaggtatccgcccaggcTGCCGGGCCGGTCCGGGATGCTGCCGGCAGCCTGGGCGGATACCTg < 1:12714718‑M1/46‑1 (MQ=255) tAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGAtgccggcacgggagccgtcatcatcc > 1:599513‑M2/1‑42 (MQ=255) aGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGaa > 1:405788/1‑67 (MQ=255) aGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCCGCAGCCTGGGCGGATACCTGaa > 1:9655066/1‑67 (MQ=255) ggATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGaa > 1:1480396/1‑66 (MQ=255) ggATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGaa > 1:11475069/1‑66 (MQ=255) gatgatGACGGCTCCCGTGCCGGCACGGTCCGGGTTGATGCCGGCAGCCTGGGCGGATACCTGaa > 1:15125649/1‑65 (MQ=255) gatgatGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGaa > 1:24470454/1‑65 (MQ=255) gatgatGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGaa > 1:20803036/1‑65 (MQ=255) atgatgACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCt < 1:19880602/67‑1 (MQ=255) atgatgACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCt < 1:26164635/67‑1 (MQ=255) atgatgACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTg > 1:28829505/1‑68 (MQ=255) atgatgACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTg > 1:6390315/1‑68 (MQ=255) atgatgACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTg > 1:16886338/1‑68 (MQ=255) atgatgACGGCTCCCGGGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCt < 1:733310/67‑1 (MQ=255) tgatgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTgg < 1:8638370/68‑1 (MQ=255) gaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTac > 1:17803021/1‑67 (MQ=255) gaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTac > 1:2577814/1‑67 (MQ=255) aCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGCATCTGGTacac > 1:12633819/1‑68 (MQ=255) aCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacac > 1:3528776/1‑68 (MQ=255) aCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacac > 1:21587689/1‑68 (MQ=255) cGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacaca < 1:21249874/68‑1 (MQ=255) ggCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacacac > 1:23219131/1‑68 (MQ=255) tCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtc < 1:9803132/68‑1 (MQ=255) tCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGt < 1:28088961/67‑1 (MQ=255) tCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGt < 1:12358999/67‑1 (MQ=255) cccGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcc < 1:3021804/68‑1 (MQ=255) ccGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcc > 1:28137585/1‑67 (MQ=255) gCCGGCCCGGGCCGGCATGCtgccggcacgggagccgtcatcatccttaacatcaacggaagaatgg > 1:848484‑M2/1‑20 (MQ=255) CGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGcc > 1:22989330‑M1/1‑68 (MQ=255) CACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgt < 1:5054681‑M1/68‑1 (MQ=255) ACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAGTCTGGTACACACGTCCTCCGGCGtgtg < 1:4627905‑M1/68‑1 (MQ=255) ACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACCCACGTCCTCCGGCCtgtg < 1:1707624‑M1/68‑1 (MQ=255) ACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgtg < 1:17015739‑M1/68‑1 (MQ=255) ACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgtg < 1:1085507‑M1/68‑1 (MQ=255) ACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgtg > 1:9433385‑M1/1‑68 (MQ=255) ACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgtg < 1:28319168‑M1/68‑1 (MQ=255) ACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgtg < 1:27825338‑M1/68‑1 (MQ=255) ggTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTggg < 1:2733884/68‑1 (MQ=255) ggTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTggg < 1:275425/68‑1 (MQ=255) ggTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTggg < 1:4936569/68‑1 (MQ=255) ggTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTggg < 1:12773858/68‑1 (MQ=255) ccGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTg > 1:20602931/1‑68 (MQ=255) gggATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGAc < 1:12228326/68‑1 (MQ=255) gggATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGAc < 1:13499521/68‑1 (MQ=255) gggATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGAc < 1:5805745/68‑1 (MQ=255) gatgatGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACa < 1:4355572/67‑1 (MQ=255) gatgatGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAt > 1:25036538/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:6232146/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:23941595/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:9142091/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:7606066/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:27074758/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:12003549/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:15597540/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:17416956/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:18139998/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:19357420/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:19698775/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:21363311/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:10149185/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:22732584/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:23474764/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:23746983/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:10013546/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:25211419/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:25301430/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:25471297/1‑68 (MQ=255) atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:26100909/1‑68 (MQ=255) tgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt < 1:22369163/67‑1 (MQ=255) tgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt < 1:18484413/67‑1 (MQ=255) tgatgCCGGCAGCCGGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt < 1:26342553/67‑1 (MQ=255) gatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATtgt < 1:15253949/68‑1 (MQ=255) gatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATtgt < 1:11005389/68‑1 (MQ=255) gatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATtgt < 1:22194008/68‑1 (MQ=255) | GCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGT > CP009273/2067414‑2067547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |