| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2543932 | 242 (0.690) | 15 (0.050) | 9/94 | NT | 6.4% | intergenic (‑28/+68) | yfeX/yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| ? | CP009273 | = 2543937 | 239 (0.810) | intergenic (‑33/+63) | yfeX/yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein | |||||
Only 100 of 372 total aligned reads displayed.
TGTTCTGGCAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGACGCAAATTAAC > CP009273/2543870‑2544004 | gTTCTGGCAAAATGCCACTCTGCACCTGAGACATTGTTCCTCTTGAAAATAATAATGCCACGCAATCc > 1:5068350‑M2/1‑67 (MQ=255) gTTCTGGCAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCc > 1:21827802‑M2/1‑67 (MQ=255) gTTCTGGCAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCc > 1:11884817‑M2/1‑67 (MQ=255) tCTGGCAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgt < 1:17097019‑M2/68‑4 (MQ=255) tCTGGCAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgt > 1:24173459‑M2/1‑65 (MQ=255) tCTGGCAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgt < 1:3037985‑M2/68‑4 (MQ=255) tCTGGCAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgt < 1:22374823‑M2/68‑4 (MQ=255) cTGGCAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgtg > 1:11440557‑M2/1‑64 (MQ=255) ggCAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgtggc > 1:6909213‑M2/1‑62 (MQ=255) ggCAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgtggc > 1:6427250‑M2/1‑62 (MQ=255) ggCAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgtggc > 1:15867619‑M2/1‑62 (MQ=255) cacaaTGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCAt > 1:6476555/4‑68 (MQ=255) cAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgtggcat < 1:11747769‑M2/68‑9 (MQ=255) cAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgtggcat < 1:24609082‑M2/68‑9 (MQ=255) cAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgtggcat < 1:9071563‑M2/68‑9 (MQ=255) cAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgtggcat < 1:27205399‑M2/68‑9 (MQ=255) cAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgtggcag < 1:1668862‑M2/68‑9 (MQ=255) aaaaTGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgtggcat > 1:21864582‑M2/1‑59 (MQ=255) aaTGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCAttgt < 1:25247126/68‑1 (MQ=255) aaTGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCAttgt < 1:922064/68‑1 (MQ=255) tGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCAttgttg > 1:18121770/1‑68 (MQ=255) tGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCAttgttg > 1:20599226/1‑68 (MQ=255) gCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGa < 1:13502180/68‑1 (MQ=255) gCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGa > 1:17912634/1‑68 (MQ=255) aCTCTGAACCTGAGACATTGTTCGTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAgc > 1:25687915/1‑67 (MQ=255) tctGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCt > 1:4713462/1‑68 (MQ=255) tctGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCt < 1:20186108/68‑1 (MQ=255) tctGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCt > 1:10448822/1‑68 (MQ=255) tctGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCt > 1:3857400/1‑68 (MQ=255) ctGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTa < 1:15133846/68‑1 (MQ=255) ctGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTa < 1:4188490/68‑1 (MQ=255) ctGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTa < 1:21183870/68‑1 (MQ=255) ctGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTa > 1:23423165/1‑68 (MQ=255) ctGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTa < 1:9418872/68‑1 (MQ=255) tGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTAt < 1:13668770/68‑1 (MQ=255) gAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTAtt < 1:19802154/68‑1 (MQ=255) aCCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTAtttt > 1:15427532/1‑68 (MQ=255) aCCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTAtttt > 1:29022343/1‑68 (MQ=255) ccTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgtggcattattattttcaggagga > 1:17585986‑M2/1‑43 (MQ=255) ccTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCcgtggcattattattttcaggagga > 1:8127383‑M2/1‑43 (MQ=255) ccTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTAtttt > 1:23958990/1‑67 (MQ=255) ccTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTAtttt > 1:10140298/1‑67 (MQ=255) ccTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTAtttt > 1:3998887/1‑67 (MQ=255) ccTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTAtttt > 1:6150649/1‑67 (MQ=255) ccTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTAtttt > 1:11147849/1‑67 (MQ=255) agaCATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACgtg > 1:7900952/1‑68 (MQ=255) aCATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGtt > 1:18556155/1‑68 (MQ=255) aCATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGtt > 1:4474189/1‑68 (MQ=255) aCATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGtt > 1:8526852/1‑68 (MQ=255) cATTGTTCCTCCTGAAAATAATACTGCCACGCAATCcgtggcattattattttcaggaggaacaatgt > 1:23076850‑M2/1‑36 (MQ=255) cATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGttt > 1:10206878/1‑68 (MQ=255) cATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGttt > 1:7381582/1‑68 (MQ=255) tGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGttttt > 1:20377156/1‑67 (MQ=255) tGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGttttt > 1:19664775/1‑67 (MQ=255) ttCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTc > 1:25458995/1‑67 (MQ=255) tcctccTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTcgc > 1:14296276/1‑68 (MQ=255) tcctccTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTcgc > 1:25870305/1‑68 (MQ=255) cctcctGAAAATAAAAATCCCACGCAATCcgtggcattattattttcaggaggaacaatgtctcaggt > 1:14398596‑M2/1‑29 (MQ=255) tcctGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCgcggc < 1:3213372/68‑1 (MQ=255) tcctGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCgcggc < 1:19008322/68‑1 (MQ=255) tcctGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCgcggc > 1:28466006/1‑68 (MQ=255) tcctGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCgcggc < 1:16247782/68‑1 (MQ=255) ctGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCgcggcg > 1:14088298/1‑67 (MQ=255) aaaTAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGcggcggcgg < 1:8779894/67‑1 (MQ=255) aaaTAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGcggcggcgg < 1:12818834/67‑1 (MQ=255) aaaTAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGt > 1:3385744/1‑68 (MQ=255) ataataatGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGttt > 1:19297046/1‑68 (MQ=255) ataataatGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGttt > 1:27742565/1‑68 (MQ=255) aataatGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGt < 1:27525861/68‑1 (MQ=255) ataatGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGt > 1:5936837/1‑67 (MQ=255) ataatGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGt > 1:13346034/1‑67 (MQ=255) ataatGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGt > 1:22915198/1‑67 (MQ=255) ataatGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGt > 1:7120744/1‑67 (MQ=255) ataatGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGt > 1:10895253/1‑67 (MQ=255) ataatGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGt > 1:25091111/1‑67 (MQ=255) ataatGCCACGCAATCCGGCGCATTGTTGAGCGCTATTTTCCGTGTATTTTCGCGGCGGCGGTTTGtt < 1:7560550/68‑1 (MQ=255) aatGCCTCGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCa > 1:3582808/1‑68 (MQ=255) aatGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCa > 1:18180634/1‑68 (MQ=255) aatGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCa > 1:662766/1‑68 (MQ=255) tGCCACGCAATCCGTGGCATTGCTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGa < 1:12080441/68‑1 (MQ=255) gCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGAc > 1:27920898/1‑68 (MQ=255) gCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGAc > 1:14924507/1‑68 (MQ=255) gCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGAc > 1:26860713/1‑68 (MQ=255) gCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGAc > 1:12488281/1‑68 (MQ=255) gCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGAc > 1:5629477/1‑68 (MQ=255) gCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGAc > 1:8861448/1‑68 (MQ=255) gCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGAc > 1:20424321/1‑68 (MQ=255) gCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGAc > 1:13951595/1‑68 (MQ=255) gCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGACGCaaa > 1:10823102/1‑68 (MQ=255) gCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGACGCaaa < 1:17323960/68‑1 (MQ=255) gCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGACGCaaa < 1:4837673/68‑1 (MQ=255) gCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGACGCaaa < 1:1470738/68‑1 (MQ=255) gCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGACGCaaa < 1:24724421/68‑1 (MQ=255) aaTCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGACGCAAAtt > 1:21335783/1‑68 (MQ=255) tgccggggcattattattttcaggaggaacaatgtcgcaggttccgagtggcattttgccagaacatt > 1:20820335‑M2/3‑3 (MQ=255) ccGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGACGCAAATTAAc > 1:1643475/1‑68 (MQ=255) ccGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGACGCAAATTAAc > 1:29180117/1‑68 (MQ=255) ccGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGACGCAAATTAAc > 1:28118853/1‑68 (MQ=255) ccGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGACGCAAATTAAc > 1:26256308/1‑68 (MQ=255) ccGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGACGCAAATTAAc > 1:20894564/1‑68 (MQ=255) | TGTTCTGGCAAAATGCCACTCTGAACCTGAGACATTGTTCCTCCTGAAAATAATAATGCCACGCAATCCGTGGCATTGTTGAGCGCTATTTTACGTGTTTTTTCGCGGCGGCGGTTTGTTCAGACGCAAATTAAC > CP009273/2543870‑2544004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |