| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3060669 = | 345 (0.980) | 12 (0.040) | 9/92 | NT | 5.0% | intergenic (‑137/+30) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| ? | CP009273 | 3060693 = | 170 (0.590) | intergenic (‑161/+6) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein | |||||
Only 100 of 428 total aligned reads displayed.
ACAGAAAATTACAGAAAAAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACA > CP009273/3060626‑3060759 | acagaaaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTAc < 1:5572058/68‑1 (MQ=255)acagaaaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTAc < 1:22571853/68‑1 (MQ=255) agaaaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa > 1:10532740/1‑68 (MQ=255) agaaaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa > 1:21403869/1‑68 (MQ=255) agaaaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa > 1:26805560/1‑68 (MQ=255) agaaaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa > 1:27820774/1‑68 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaaa < 1:22121785/66‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa < 1:8887554/65‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa < 1:20169526/65‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa < 1:137824/65‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa < 1:2915655/65‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa < 1:4575407/65‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACa < 1:5271225/64‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAata < 1:3619965/68‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAat < 1:11435574/67‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAat < 1:2444142/67‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAat < 1:17194142/67‑1 (MQ=255) aaattacagaaaaAGGAGGCAATACCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAat < 1:18599182/67‑1 (MQ=255) attacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAAtatt < 1:12053928/68‑1 (MQ=255) attacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAAtatt < 1:8729325/68‑1 (MQ=255) aacccgctaaaacacctgcagcacaataatatttgTAGCCCGACGAATACGTCGGGCTACAAAtatta < 1:17693531‑M1/33‑1 (MQ=255) acagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATattatt > 1:25672060/1‑68 (MQ=255) cgctaaaacacctgcagcacaataatatttatagcccgacgtattcgtcgggctaCAAATATTATtgt < 1:7097034‑M2/13‑1 (MQ=255) agaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATtgt > 1:7741583/1‑68 (MQ=255) aaaaGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATtgt < 1:17895767/65‑1 (MQ=255) aaGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGtgctgc < 1:12687810/68‑1 (MQ=255) gaggCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAgg > 1:10649073/1‑68 (MQ=255) gaggCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAgg > 1:15237780/1‑68 (MQ=255) cacctgcagcacaataatatttgTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAgg < 1:19823689‑M1/45‑1 (MQ=255) acctgcagcacaataatatttgTAGCCCGCCGAATACGTCGGGCTACAAGTATTATTGTGCTGCAGgt < 1:20495951‑M1/46‑1 (MQ=255) ggCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGgt < 1:16711001/67‑1 (MQ=255) ggCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGgt < 1:9238297/67‑1 (MQ=255) ggCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGgt < 1:20978571/67‑1 (MQ=255) ctgcagcacaataatatttgtagcccgacgtattcgtcgggctaCAAATATTATTGTGCTGCAGgtgt < 1:24151192‑M2/24‑1 (MQ=255) cAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGgtgt < 1:18157855/67‑1 (MQ=255) cAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGgtgt < 1:28306333/67‑1 (MQ=255) cAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGgtg < 1:18794782/66‑1 (MQ=255) atatCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGtttt > 1:29035167/1‑68 (MQ=255) atCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTa > 1:13097455/1‑67 (MQ=255) atCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTa > 1:14275084/1‑67 (MQ=255) atCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTa > 1:9726196/1‑67 (MQ=255) tCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGc > 1:932714/1‑68 (MQ=255) gTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATattatt > 1:21899012/1‑45 (MQ=255) gTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGgt > 1:14199035/1‑68 (MQ=255) gTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGgt > 1:25887276/1‑68 (MQ=255) tAAAGTCTTTAGCCCGTCGAATAGGTCGGGCTACAAATATTATTTTGCTGCAGGTGTTTTAGCGGgt < 1:3417381/67‑1 (MQ=255) aaaGGCATTAGGCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGgtt < 1:2321776/67‑1 (MQ=255) aaaGGCATTAGCCCGACGATTACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGgttg > 1:17507103/1‑68 (MQ=255) aaaGGCATTAGCCCGACGAATACGTCGGGCTACAAATTTTATTGTGCTGCAGGTGTTTTAGCGGgtt < 1:5181367/67‑1 (MQ=255) aaaGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGgtt < 1:7280733/67‑1 (MQ=255) aaaGGCATTAGCCCGACGAATACGTCGGGCTACAAATAATATTGTGCTGCAGGTGTTTTAGCGGgtt < 1:4025238/67‑1 (MQ=255) aGGCATAAGCCCGTCGAAAACCTCGGGCTACAAATATTATTGTGCAGCAGGTGTTATAGCGGgttgtt < 1:10583393/68‑1 (MQ=255) ggCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGttgttg > 1:736234/1‑68 (MQ=255) gCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGa > 1:8192939/1‑68 (MQ=255) gCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGa > 1:8003870/1‑68 (MQ=255) gCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGa > 1:19047089/1‑68 (MQ=255) gCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGa > 1:9030841/1‑68 (MQ=255) gCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGa > 1:16334362/1‑68 (MQ=255) gCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGa > 1:16974536/1‑68 (MQ=255) gCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCGGCAGGTGTTTTAGCGGGTTGTTGa > 1:9525785/1‑68 (MQ=255) cATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGa < 1:11625881/67‑1 (MQ=255) cATTAGCCCGACGAATACGGCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGa < 1:5966777/67‑1 (MQ=255) aTTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGAt < 1:25396267/67‑1 (MQ=255) aTTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATc < 1:11084892/68‑1 (MQ=255) TAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCca > 1:20421838‑M1/1‑68 (MQ=255) AGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCcac < 1:22987400‑M1/68‑1 (MQ=255) GCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCcaca < 1:11001615‑M1/68‑1 (MQ=255) CCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAg < 1:28017534‑M1/68‑1 (MQ=255) CCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAg < 1:28824754‑M1/68‑1 (MQ=255) CCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAg < 1:10093679‑M1/68‑1 (MQ=255) CCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAg < 1:21718534‑M1/68‑1 (MQ=255) CCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAg < 1:4402571‑M1/68‑1 (MQ=255) CCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAg < 1:4705895‑M1/68‑1 (MQ=255) ccgacgtattcgccgggctaCAAATATTATTGTGCGGCAGGTGTTTTAGCGGGTTGTTGATCCACAgg < 1:19370219‑M2/48‑1 (MQ=255) CCGACTAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAgg > 1:16003685‑M1/1‑68 (MQ=255) CCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAgg > 1:12322486‑M1/1‑68 (MQ=255) CCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAgg > 1:19976243‑M1/1‑68 (MQ=255) CCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAgg > 1:15534365‑M1/1‑68 (MQ=255) CCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAgg > 1:24273625‑M1/1‑68 (MQ=255) CCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAgg > 1:11729210‑M1/1‑68 (MQ=255) CCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAgg > 1:26670921‑M1/1‑68 (MQ=255) CGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGt > 1:6146700‑M1/1‑68 (MQ=255) CGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCt < 1:25027632‑M1/68‑1 (MQ=255) CGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCt > 1:671804‑M1/1‑68 (MQ=255) tACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACt < 1:14831097/68‑1 (MQ=255) tACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACt < 1:2158821/68‑1 (MQ=255) tACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACt < 1:25469643/68‑1 (MQ=255) tACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACt < 1:13320156/68‑1 (MQ=255) aCGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTg > 1:988030/1‑68 (MQ=255) aCGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTg > 1:26171312/1‑68 (MQ=255) aCGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTg < 1:22443572/68‑1 (MQ=255) cgtcgggctaCAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTgg > 1:28445455‑M2/11‑68 (MQ=255) cgggctaCAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAg < 1:16558126‑M2/61‑1 (MQ=255) cgggctaCAAAAATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAg < 1:8483704‑M2/61‑1 (MQ=255) ggctaCAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTATAACTGGAAGa > 1:6349791‑M2/6‑67 (MQ=255) ctaCAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGAcc > 1:23763730‑M2/4‑67 (MQ=255) ctaCAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGAcc > 1:1119639‑M2/4‑67 (MQ=255) taCAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACcac < 1:307654‑M2/66‑1 (MQ=255) taCAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACcac < 1:27426031‑M2/66‑1 (MQ=255) taCAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACcac < 1:24809964‑M2/66‑1 (MQ=255) | ACAGAAAATTACAGAAAAAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTATTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACA > CP009273/3060626‑3060759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |