| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4375165 = | 499 (1.200) | 22 (0.070) | 9/90 | NT | 6.2% | intergenic (+7/‑45) | yjeM/yjeN | putative transporter/uncharacterized protein |
| ? | CP009273 | 4375192 = | 263 (0.790) | intergenic (+34/‑18) | yjeM/yjeN | putative transporter/uncharacterized protein | |||||
Only 100 of 205 total aligned reads displayed.
GGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4375242‑4375165‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgatagggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGG > CP009273/4375192‑4375257 GGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAG < 1:33258831/68‑1GGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAG < 1:28415690/68‑1GGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAG < 1:13382230/68‑1GGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAG < 1:23373892/68‑1GGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAG < 1:22456411/68‑1GGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAG < 1:19456935/68‑1 cTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAG > 1:32653636/2‑67 GTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAG > 1:2544953/1‑67 TTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGAC > 1:31625966/1‑68 TTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGAC > 1:12562432/1‑68 TTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGA < 1:20046149/67‑1 tcTTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:23691224/66‑1 TATTGCCGGGTCCCGGCTGGTTTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:32210520/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTGTCGTCAGGTAGACG < 1:17347633/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:25096850/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:10338309/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:10817550/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:31978879/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:33583200/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:30986002/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:30379367/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:28502260/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:1186725/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:27202076/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:4424134/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG > 1:11904234/1‑68 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:24005845/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:18657893/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:7626011/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:8233274/68‑1 TATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGAC < 1:26135184/67‑1 TATTGCCGGGTCCCGGCTGGTGGCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG < 1:9100354/68‑1 TATTGCAGGGTCCCGGCTGGTGTAATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACt < 1:31503032/68‑2 TTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGAT < 1:26380455/68‑1 TTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGAT < 1:23984551/68‑1 TTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGAT < 1:23366572/68‑1 TTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGAT < 1:23650880/68‑1 GCCGGGTCCCGGCTGGTGTCATCCATAACATTTCGTGTCTTTACGCCCTATCGTCAGGTAGACGAaac > 1:14961925/1‑65 GCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTTGACGATtg > 1:23243923/1‑66 GCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAG > 1:29487772/1‑68 CCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGG > 1:3729365/1‑68 CCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGG > 1:28762444/1‑68 CCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGG > 1:34269813/1‑68 CCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGG > 1:17030570/1‑68 CCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGG > 1:24647703/1‑68 CCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGG > 1:1385337/1‑68 CCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGG > 1:24184299/1‑68 CGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGG < 1:13563351/68‑1 CGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGG < 1:23135191/68‑1 CGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGG < 1:5329801/68‑1 GGGTCCCGGCTGGTGTCATCCATACCATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC < 1:5835121/68‑1 GGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC < 1:27435743/68‑1 GGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC < 1:6628253/68‑1 GGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC < 1:18076070/68‑1 GGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC < 1:27612371/68‑1 GGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC < 1:21060619/68‑1 GGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC < 1:21340963/68‑1 GGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC < 1:5096389/68‑1 GGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC < 1:32394981/68‑1 GGGTCCCGGCTGGTGTCAACCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC < 1:28931640/68‑1 GTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGCG < 1:24917323/67‑1 CCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGG > 1:14584800/1‑62 CATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAAT < 1:27334298/67‑1 CATCCATAACATTTCCTGTCTTTACGCCCTATCGGCAGGTAGACGATAGGGCGTAAAGACAGGAAATG < 1:3924062/68‑1 ATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGT < 1:22193427/68‑1 ATCCATAACATTTCCTGTCTTTACGCCCAATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGT < 1:5744252/68‑1 TAACATTTCCTGTCTTTACGCCCTATCGCCCGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGG < 1:11256241/68‑1 TAACATTTCCTGTCTTTACGCCCTATCGCCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGG < 1:34393172/68‑1 TAACAATTCCTGTCTTTACGCCCTAGCGTCCGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGG < 1:31703878/68‑1 GACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGAT > 1:27894406/1‑68 GATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAc < 1:5619640/68‑2 GATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAA > 1:14229986/1‑68 GATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAA < 1:7977096/68‑1 GATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAA < 1:8644798/68‑1 GATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAA < 1:20662784/68‑1 ATAGGGCGTAAGGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA > 1:33116938/1‑68 ATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA > 1:4281449/1‑68 ATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA > 1:26653524/1‑68 ATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA > 1:1632143/1‑68 ATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA > 1:29589115/1‑68 ATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA > 1:25844438/1‑68 TAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGTTGAAAT < 1:5918552/68‑1 TAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA < 1:30142554/67‑1 TAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA < 1:15641525/67‑1 TAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA < 1:17363015/67‑1 TAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA < 1:10091321/67‑1 TAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA < 1:7499971/67‑1 TAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA < 1:20420833/67‑1 TAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA < 1:19559383/67‑1 TAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAA < 1:19170681/67‑1 AGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATC > 1:9278796/1‑68 AGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATC > 1:14760714/1‑68 AGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATC > 1:20686680/1‑68 GGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCA > 1:28165980/1‑68 GGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCA > 1:16562493/1‑68 GGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAG > 1:19225168/1‑68 GGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAG > 1:30533178/1‑68 GCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGG > 1:29700130/1‑68 GCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGG > 1:34534632/1‑68 GCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGG > 1:31173391/1‑68 GGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4375242‑4375165‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgatagggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGG > CP009273/4375192‑4375257 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |