| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4382219 | 197 (0.480) | 7 (0.020) | 3/96 | NT | 5.9% | noncoding (43/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382314 | 54 (0.150) | noncoding (26/76 nt) | glyX | tRNA‑Gly | |||||
GCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4382145‑4382219‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggtcgTGCTCTACCAACTGA < CP009273/4382314‑4382300 GCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCC < 1:28011372/68‑1GCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCC > 1:5754507/1‑68 GAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGCTCACTACGATGCCAA > 1:23214621/1‑68 GAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAA > 1:21322922/1‑68 GAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAA > 1:32712617/1‑68 AAATTCCTAAACCAAAAATAACTACTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:33106744/68‑1 AAATTACGAACGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:18948467/68‑1 AAATTACGAACGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAG < 1:13672185/67‑1 AAATTACGAACGCAAAATTAAGTAGTACGCGGGAATAGCTCAGGTGGTAGAGCACGACCTTGCCAAGG < 1:29294856/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTCGAGCACGACCTTGCCAAGG < 1:32787184/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:5323751/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:5219738/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:9317259/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:5363466/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:5501425/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:31157454/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:28069316/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:6630650/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:22983107/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG > 1:22819044/1‑68 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:25771749/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:12606943/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:16141202/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:21321088/68‑1 AAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:21225702/68‑1 AAATAACGACAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:17395549/68‑1 AATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGT < 1:12576214/68‑1 AATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGT < 1:32676619/68‑1 TACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGT < 1:22353715/68‑1 AGCAAAATTACGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTCTA < 1:5952885/68‑1 AGCAAAATTAAGTCGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTCTA < 1:5276841/68‑1 AAAATTAAGTAGTACGCGGGAAAAGCTCAGTTGGTAGAGCACGACCTGGCCACGGTCGTGCGCTACCA < 1:31847037/68‑1 AAAATTAAGTAGAACGCGGGAATAGCACAGTTGGTAGAGCACGACCTTGCCACGGTCGTGCTCTACCA < 1:17580379/68‑1 TTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGG < 1:8969708/51‑1 TAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTCTACCAACTGA < 1:19741043/68‑1 TAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTCTACCAACTGA < 1:14592918/68‑1 TAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGTGCTCTACCAACTGA < 1:21976012/68‑1 AGTACGCGGGAATAGCTCAGCTGGTAGAGCACGACCTTGCCAAGG > 1:19526925/1‑45 GCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4382145‑4382219‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggtcgTGCTCTACCAACTGA < CP009273/4382314‑4382300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |