| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4382219 | 197 (0.480) | 7 (0.020) | 3/96 | NT | 5.9% | noncoding (43/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382314 | 54 (0.150) | noncoding (26/76 nt) | glyX | tRNA‑Gly | |||||
Only 100 of 224 total aligned reads displayed.
TACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCC > CP009273/4382153‑4382286 | tACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGt < 1:22353715‑M1/68‑2 (MQ=255) cGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCgggg < 1:29920073/68‑1 (MQ=255) aGCAAAATTAAGTCGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGtgctcta < 1:5276841‑M1/68‑8 (MQ=255) aaaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa < 1:28600471/67‑1 (MQ=255) aaaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAg < 1:10011868/68‑1 (MQ=255) aaaaTTAAGTAGAACGCGGGAATAGCACAGTTGGTAGAGCACGACCTTGCCACGGTCGtgctctacca < 1:17580379‑M1/68‑11 (MQ=255) ttAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCg > 1:29599324/1‑68 (MQ=255) tAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGtgctctaccaactga < 1:21976012‑M1/68‑16 (MQ=255) tAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGtgctctaccaactga < 1:19741043‑M1/68‑16 (MQ=255) aaGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg < 1:20879809/68‑1 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTTGAGCACGACCTTGGCAAGGTCGGGGTCGCGAGTTCGCGta > 1:7535026/1‑67 (MQ=14) gtagtaCGCGGGAATAGCTCAGTTGGTAGATCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtc > 1:4980919/1‑68 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:30464279/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:30862112/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:30979980/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:10846850/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:23215656/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:2000946/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:16503052/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:1582596/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:15705614/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:9200434/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGAGAGTTAGAGtc > 1:3798514/1‑68 (MQ=255) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:11997751/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:26145081/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:23977524/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:23924970/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:6459841/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:23637817/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:30043513/1‑68 (MQ=39) agcaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc < 1:33872601/65‑1 (MQ=18) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt > 1:21487024/1‑68 (MQ=33) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt < 1:70477/68‑1 (MQ=33) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTGGAGGCTCGATACCCGCACCATAATTTGaaaa > 1:11337191/1‑68 (MQ=11) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTTGTTTCCCGCTCCAAAATTTGaaaa > 1:32658167/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGatag > 1:1526465/1‑65 (MQ=1) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:21298109/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:29323229/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:31180964/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:33114198/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:9372814/1‑68 (MQ=31) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaat > 1:20445387/1‑67 (MQ=14) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAg > 1:27888703/1‑68 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAg > 1:7862738/1‑68 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAg > 1:33656854/1‑68 (MQ=33) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt > 1:29102922/1‑68 (MQ=35) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATATTaaaaca > 1:16362803/1‑66 (MQ=11) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:32298171/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:24060886/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:18532706/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:14734961/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:27015933/66‑1 (MQ=35) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgct < 1:10941152/67‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgct < 1:30412917/67‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgct > 1:7801872/1‑67 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgc < 1:25301695/66‑1 (MQ=39) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:31349657/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:32077851/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:4485960/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:8478502/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:10466459/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:16031736/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:27509451/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:14341193/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:29816004/68‑1 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaa > 1:29168459/1‑68 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGaaaa > 1:17227066/1‑68 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaaa < 1:26870241/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaaa < 1:257761/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaa < 1:13326190/67‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg < 1:31411891/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg < 1:12481376/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg < 1:551985/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCGCGGTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg < 1:14656017/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaaacc < 1:26491290/68‑3 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:6054048/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:12698232/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:6252128/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:6775736/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:8335165/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:18621949/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:11604168/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:9488507/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:9741335/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:18330415/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:24903018/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCGGCAAAGc < 1:31742751/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCAGCAAAGc < 1:3268247/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTGCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:23688286/68‑1 (MQ=255) ttGCCAAGGGCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:29362368/68‑1 (MQ=255) cAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAATGTAGTGCAAAGcaca > 1:24686108/1‑67 (MQ=14) cAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAg > 1:2440624/1‑68 (MQ=255) aaGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGa < 1:14519110/68‑1 (MQ=255) aaGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGa < 1:8244053/68‑1 (MQ=255) aaGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGa < 1:28281290/68‑1 (MQ=255) tCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGccca > 1:24720411/1‑67 (MQ=255) cGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGaccacc < 1:23778022/68‑1 (MQ=255) cGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGaccac < 1:3602297/67‑1 (MQ=255) ggggTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCAccc < 1:33973987/68‑1 (MQ=255) ggggTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCAccc < 1:13645588/68‑1 (MQ=255) | TACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCC > CP009273/4382153‑4382286 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |