| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4382219 | 197 (0.480) | 7 (0.020) | 3/96 | NT | 5.9% | noncoding (43/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382314 | 54 (0.150) | noncoding (26/76 nt) | glyX | tRNA‑Gly | |||||
Only 100 of 206 total aligned reads displayed.
TCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGT > CP009273/4382249‑4382381 | ccAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:6428029‑M1/68‑1 (MQ=255) ccAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:12714852‑M1/68‑1 (MQ=255) ctaaattTGAAAAGTGCTGCAAATAACATACCACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:28099057‑M1/66‑1 (MQ=255) cAAAATTTGAAAAGTGCTTCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:8671757‑M1/68‑1 (MQ=255) cAAAATTTGAAAAGTGCTGCTAAGAACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:27304586‑M1/68‑1 (MQ=255) cAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:6876117‑M1/68‑1 (MQ=255) cAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:20329652‑M1/68‑1 (MQ=255) cAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:3130179‑M1/68‑1 (MQ=255) cAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:2737217‑M1/68‑1 (MQ=255) cAAAATTTGAAAAGTGCTGAAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:34489582‑M1/68‑1 (MQ=255) ataaattTGAAAAGTTCTTCAAATCACATACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:23497302‑M1/66‑1 (MQ=255) aaaaatTTGAAAAGTGCTTCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:9570480‑M1/67‑1 (MQ=255) aaaaatTTGAAAAGTGCGGCATATCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:14347937‑M1/67‑1 (MQ=255) aaaaaTTTGAAAATTCCTGCATATAAAATACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAc < 1:32989580/67‑1 (MQ=14) aaaaaTGTGAAAATTTCTGCACAGCAAATACGACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGa < 1:18750799/66‑1 (MQ=17) aaaTTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCT < 1:11353044‑M1/68‑1 (MQ=255) aTTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:27749704‑M1/68‑1 (MQ=255) aTTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:27010851‑M1/68‑1 (MQ=255) aTTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:1419454‑M1/68‑1 (MQ=255) aTTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:9435666‑M1/68‑1 (MQ=255) ttGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCc < 1:32923416‑M2/68‑2 (MQ=255) ttGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCc > 1:34142490‑M2/1‑67 (MQ=255) gAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaa > 1:25201751‑M2/1‑65 (MQ=255) aaaGTGCTGCAAGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg < 1:4751661‑M2/68‑6 (MQ=255) aaaGTGCTGCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:29488742‑M2/1‑63 (MQ=255) aaaGTGCTGCAAAGCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:24444379‑M2/1‑63 (MQ=255) aaaGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg < 1:720787‑M2/68‑6 (MQ=255) aaaGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg < 1:15937201‑M2/68‑6 (MQ=255) aaaGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaag > 1:26726689‑M2/1‑63 (MQ=255) aaaGTCCTTCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:11834658‑M2/1‑63 (MQ=255) aaaGTCCTCCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:352627‑M2/1‑63 (MQ=255) aGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGGTGGGTGAGCACGAACTAGCcaaggtc < 1:319172‑M2/68‑8 (MQ=255) gcttcAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgt > 1:23417356‑M2/1‑58 (MQ=255) gctggAACGCACAGACCACCCACGCGGGAATAGCTCTGTTGGTAGAGCACGACCTTGCcaagg > 1:17967225‑M2/1‑58 (MQ=255) gctgcAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCggg > 1:30187438/1‑68 (MQ=40) cctgcACACCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCggg < 1:26210489/67‑1 (MQ=11) tgcAAAGCACATACCACCCAAGCGGTAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgc > 1:28540737‑M2/1‑56 (MQ=255) tccaaAGAACAGACCACCCAAGCGGGAATAGCTCAGTTGGTTGAGCACGACCTTGCcaaggtcgtgc > 1:10991820‑M2/3‑56 (MQ=255) aaaGCACAGCCCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:28081647/1‑68 (MQ=25) aaaGCACAGACCACCCAAGCGGTAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctcta > 1:30044770‑M2/1‑53 (MQ=255) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:3167466/1‑68 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:10108738/1‑68 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:23072007/1‑68 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:22228415/1‑68 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:14084098/1‑68 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:18344717/1‑68 (MQ=35) acaGACCACCCACGCGGGAATAGCTCAGTTGGTAGCGCACGACCTTGCcaaggtcgtgctctacca > 1:17128871‑M2/1‑48 (MQ=255) acaGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaag < 1:32294238‑M2/52‑5 (MQ=255) ccaccCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactga > 1:31788040‑M2/1‑43 (MQ=255) cccAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctat > 1:9584895‑M2/1‑40 (MQ=255) cccAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctat > 1:17097759‑M2/1‑40 (MQ=255) gggAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctattcccg > 1:32339264‑M2/1‑33 (MQ=255) tCAGTTGGTAGAGCAcgaccttggcaaggtcgtgctctaccaactgagctattcccgcgtactactta < 1:14592918‑M2/68‑54 (MQ=255) tCAGTTGGTAGAGCAcgaccttggcaaggtcgtgctctaccaactgagctattcccgcgtactactta < 1:19741043‑M2/68‑54 (MQ=255) tCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctattcccgcttgggtgg < 1:27503587‑M2/66‑43 (MQ=255) tGGTAGAGCAcgaccgtggcaaggtcgtgctctaccaactgtgctattcccgcgttctacttaatttt < 1:17580379‑M2/68‑59 (MQ=255) tAGAGCAcgaccttggcaaggtcgtgctctaccaactgagctattcccgcgtacgacttaattttgct < 1:5276841‑M2/68‑62 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATT‑TTGAAAg > 1:715081/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAg > 1:1396644/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAg > 1:33425312/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAg > 1:12390066/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGCAAg > 1:32389038/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGCAAg > 1:30544681/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAg > 1:12828590/1‑68 (MQ=31) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAga > 1:29940719/1‑67 (MQ=9) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAGt > 1:24570249/1‑68 (MQ=18) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:3888640/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:9720072/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:8028197/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:16102102/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:2117957/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:16655075/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:21764095/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:25406379/68‑1 (MQ=33) agagCACGACCTTGCCAAGGGCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:13989586/68‑1 (MQ=18) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATGTTCAAAGt > 1:9008459/1‑68 (MQ=1) gCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgca > 1:21090285‑M1/1‑11 (MQ=255) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATT‑TTGAAAGt > 1:23330454/1‑65 (MQ=18) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGc < 1:28341254/67‑1 (MQ=37) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGc < 1:5835291/67‑1 (MQ=37) gCAAGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGc < 1:31524025/67‑1 (MQ=255) cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGATg > 1:2159646/1‑68 (MQ=25) acgaccttggcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgta < 1:22353715‑M2/68‑68 (MQ=255) aCGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgccttgcagc > 1:2532689‑M1/1‑9 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGCGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCt < 1:14492495/66‑1 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCt < 1:32037148/66‑1 (MQ=39) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCt < 1:16306404/66‑1 (MQ=39) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCt < 1:11785776/66‑1 (MQ=39) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCt < 1:21298329/66‑1 (MQ=39) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCt < 1:22747745/66‑1 (MQ=39) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:537818/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:7946727/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:33716739/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:3305436/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:2556926/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:28448118/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:13749834/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:3112373/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:10935763/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGATGt > 1:829623/1‑68 (MQ=255) | TCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGT > CP009273/4382249‑4382381 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |