| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4382322 | 109 (0.260) | 9 (0.030) | 7/96 | NT | 7.2% | noncoding (34/76 nt) | glyX | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 138 (0.390) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
TCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4382249‑4382322‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccttgGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTTTCAA < CP009273/4382323‑4382257 TCCAAAATTTGAAAAGAGATGCAAAGCACAGACAACACTAGCGGGAATAGCTCAGTTGGTAGAGCACG > 1:25839826/1‑68 CCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:11578054/68‑1 CCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:6428029/68‑1 CCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:3494337/68‑1 CCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:12714852/68‑1 ctAAATTTGAAAAGTGCTGCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:19514445/66‑1 ctAAATTTGAAAAGTGCTGCAAATAACATACCACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:28099057/66‑1 ctAAATTAGAAAAGTGCTGCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:16394084/66‑1 atAAATTTGAAAAGTTCTTCAAATCACATACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:23497302/66‑1 aAAAATTTGAAAAGTGCTTCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:9570480/67‑1 aAAAATTTGAAAAGTGCGGCATATCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:14347937/67‑1 aAAAATTAGAAAAGTGCTCCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:22279433/66‑1 CAAAATTTGAAAATTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:28436827/68‑1 CAAAATTTGAAAAGTGCTTCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:24461081/68‑1 CAAAATTTGAAAAGTGCTTCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:8671757/68‑1 CAAAATTTGAAAAGTGCTGCTAAGAACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:27304586/68‑1 CAAAATTTGAAAAGTGCTGCATAGCACATACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:21583697/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACATACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:9785596/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:6876117/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:20329652/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:979482/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:7187378/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:3130179/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:31632565/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:319538/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:2737217/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:25542189/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:24415043/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:13895910/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:1576096/68‑1 CAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:6751310/67‑1 CAAAATTTGAAAAGTGCTGAAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:34489582/68‑1 CAAAATTTGAAAAGTCCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:31203966/68‑1 AAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCT < 1:11353044/68‑1 AATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT < 1:11238319/68‑1 ATTTGAAAATTGCTGCAAATCACATACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:1180492/68‑1 ATTTGAAAAGTGCTGCACAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:16105635/68‑1 ATTTGAAAAGTGCTGCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:12338139/68‑1 ATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:1028285/68‑1 ATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:27749704/68‑1 ATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:9435666/68‑1 ATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:14105744/68‑1 ATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:27010851/68‑1 ATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:1419454/68‑1 ATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:3632698/68‑1 ATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT > 1:33037168/1‑67 ATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT > 1:1420413/1‑67 ATTTGAAAAGTCCTCCACATAACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:28051051/68‑1 AAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGT < 1:23426482/68‑1 CCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGA < 1:27503587/66‑1 CGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCC > 1:32339264/1‑66 ATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGG > 1:9584895/1‑68 ATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGG > 1:17097759/1‑68 TCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGG > 1:31788040/1‑66 TCAGTTGGTAGAGCACGACCTTGGCAAGGGCGTGCTCTACCAACTGAGCTATTCCCGCTGGGGTGG > 1:27094488/1‑66 TGGTAGAGCACGACCTTGGCAAGGTCGTGCGCTACCAACTGAGCTATTCCCGCGTGGGTGGTCTGT > 1:17128871/1‑66 TAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTACCGCTTGGGTGGTCTGTGCTTT > 1:30044770/1‑68 GCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCA > 1:21090285/1‑67 GCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTACCGCTTGGGTGGTATGTGCTTTGCA > 1:28540737/1‑67 GCACGACCTTGGCAAGGTCGTGCTCAACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTTCTTTGga > 1:10991820/1‑65 ACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGAAGC > 1:23417356/1‑67 ACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCCTTGCAGC > 1:2532689/1‑67 GACCTTGGCTAGTTCGTGCTCACCCACCTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACT < 1:319172/68‑1 GACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACT < 1:28082098/68‑1 GACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACT < 1:21698891/68‑1 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGGTTTGAAGGACTTT > 1:11834658/1‑68 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT > 1:13966984/1‑68 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT < 1:15937201/68‑1 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT < 1:720787/68‑1 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT < 1:2072735/68‑1 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTT < 1:34480071/67‑1 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTGTGCAGCACTTT > 1:12647640/1‑68 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCCTTGCAGCACTTT < 1:4751661/68‑1 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGATTTGGAGGACTTT > 1:352627/1‑68 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGATTTGCAGCACTTT > 1:29488742/1‑68 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGG < 1:4780700/48‑1 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTGGGTGGTCTGTGCTTTGCAGCACTTT > 1:24444379/1‑68 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTGGGTGGTCTGTGCTTTGCAGCACTTT > 1:27642100/1‑68 CCTTGGCAAGGTCGTGCTCTACCAACAGAGCTATTCCCGCGTGGGTGGTCTGTGCGTTCCAGC > 1:17967225/1‑63 CTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT > 1:26726689/1‑67 CTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGT < 1:32294238/52‑1 TTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTTTC > 1:25201751/1‑68 GGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTTTCAA > 1:34142490/1‑68 GGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTTTCAA < 1:32923416/68‑1 GGCAAGGTCGTGCTCTACCAACTCAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTTTCAA < 1:32960752/68‑1 TCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4382249‑4382322‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccttgGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTTTCAA < CP009273/4382323‑4382257 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |