| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4382322 | 109 (0.260) | 9 (0.030) | 7/96 | NT | 7.2% | noncoding (34/76 nt) | glyX | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 138 (0.390) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
Only 100 of 192 total aligned reads displayed.
TTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAGGCACAG > CP009273/4382256‑4382390 | ttGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCc < 1:32923416‑M2/68‑2 (MQ=255) ttGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCc > 1:34142490‑M2/1‑67 (MQ=255) gAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaa > 1:25201751‑M2/1‑65 (MQ=255) aaaGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg < 1:15937201‑M2/68‑6 (MQ=255) aaaGTCCTTCAAACCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:11834658‑M2/1‑63 (MQ=255) aGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGGTGGGTGAGCACGAACTAGCcaaggtc < 1:319172‑M2/68‑8 (MQ=255) gctggAACGCACAGACCACCCACGCGGGAATAGCTCTGTTGGTAGAGCACGACCTTGCcaagg > 1:17967225‑M2/1‑58 (MQ=255) gctgcAAGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgt > 1:2532689‑M2/1‑58 (MQ=255) gctgcAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCggg > 1:30187438/1‑68 (MQ=40) tgcAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgc > 1:21090285‑M2/1‑56 (MQ=255) cAAACCACATACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcg < 1:18712178/68‑1 (MQ=11) aaaGCACAGCCCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:28081647/1‑68 (MQ=25) aaaGCACAGACCACCCAAGCGGTAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctcta > 1:30044770‑M2/1‑53 (MQ=255) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:26687737/1‑68 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:22478364/1‑68 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:23072007/1‑68 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:10108738/1‑68 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:14084098/1‑68 (MQ=35) ccaccCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg < 1:4780700‑M2/48‑6 (MQ=255) cccAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctat > 1:17097759‑M2/1‑40 (MQ=255) gggAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctattcccg > 1:32339264‑M2/1‑33 (MQ=255) tCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctattcccgcttgggtgg < 1:27503587‑M2/66‑43 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATT‑TTGAAAg > 1:715081/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAg > 1:12390066/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAg > 1:33425312/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAg > 1:1396644/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGCAAg > 1:30544681/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGCAAg > 1:32389038/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAg > 1:18311535/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAg > 1:21205674/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAg > 1:17156384/1‑68 (MQ=31) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATT‑TTGAAAGt > 1:8408372/1‑68 (MQ=18) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAga > 1:29940719/1‑67 (MQ=9) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAGt > 1:24570249/1‑68 (MQ=18) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAg < 1:32201759/67‑1 (MQ=31) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:25406379/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:8028197/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:9680508/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:16102102/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:19899892/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:21764095/68‑1 (MQ=33) agagCACGACCTTGCCAAGGGCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:13989586/68‑1 (MQ=18) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATT‑TTGAAAGTg > 1:12759655/1‑68 (MQ=25) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATGTTCAAAGt > 1:9008459/1‑68 (MQ=1) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATT‑TTGAAAGt > 1:23330454/1‑65 (MQ=18) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATT‑TTGAAAGt > 1:14559183/1‑65 (MQ=18) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGc < 1:26753519/67‑1 (MQ=37) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGc < 1:5835291/67‑1 (MQ=37) cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt > 1:33557745/1‑64 (MQ=33) cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGATg > 1:2159646/1‑68 (MQ=25) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAGTGATga > 1:31524399/1‑67 (MQ=11) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCt < 1:22178440/66‑1 (MQ=39) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCt < 1:9559551/66‑1 (MQ=39) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:3396871/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:14421920/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:3112373/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:10935763/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:3305436/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:17628555/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:13749834/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:2556926/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:28448118/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:28210627/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:13095662/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:7946727/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:537818/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGATGt > 1:4037189/1‑68 (MQ=255) aCCTTGCcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcactt < 1:23426482‑M2/68‑62 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATT‑GTGAAAGTGCTGTAAg > 1:14047079/1‑68 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAGAGATGTaat > 1:18646874/1‑67 (MQ=11) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAg > 1:8260176/1‑68 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGATGTaat > 1:19112067/1‑67 (MQ=255) ccTTGGCAAGGTCGGGGTCGCGAGTTCGAGTATCGTTTGCCGGTCCAAAAT‑TTGAAAGTGCTGTAAgg > 1:3554624/1‑68 (MQ=17) ccTTGCCACGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:27301984/68‑1 (MQ=255) ccTTGCCAAGGTCGTGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:29350995/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTaatg > 1:4230057/1‑66 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:24917046/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:11782533/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:22739700/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:7645645/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:25862718/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:6877063/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:2729606/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:516646/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:3469525/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:13138351/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:24165092/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:16352347/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:30530927/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:31416440/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:15043661/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAg > 1:32468287/1‑67 (MQ=255) ccTTGACAAGGGCTGGGTCGCGAGTTCGAGTCTCGTTTACCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:23268415/68‑1 (MQ=17) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGATAGTGCTGTAAgg > 1:7488974/1‑67 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTa > 1:297074/1‑64 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAGGc < 1:10044282/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAGGc < 1:8678602/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAGGc > 1:31780056/1‑68 (MQ=255) gCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAGGcaca < 1:29441771/68‑1 (MQ=255) ccAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGATGTAATGaacac > 1:34235190/1‑67 (MQ=14) | TTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAGGCACAG > CP009273/4382256‑4382390 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |