| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4382322 | 109 (0.260) | 9 (0.030) | 7/96 | NT | 7.2% | noncoding (34/76 nt) | glyX | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 138 (0.390) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
Only 100 of 240 total aligned reads displayed.
ATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAGGCACA > CP009273/4382255‑4382389 | aTTTGAAAATTGCTGCAAATCACATACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:1180492‑M1/68‑1 (MQ=255)aTTTGAAAAGTGCTGCACAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:16105635‑M1/68‑1 (MQ=255)aTTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:1028285‑M1/68‑1 (MQ=255)aTTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:14105744‑M1/68‑1 (MQ=255)aTTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:27749704‑M1/68‑1 (MQ=255)aTTTGAAAAGTGCGACAACCCACTTACCACGCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTg < 1:22894231/68‑1 (MQ=14) aaaGTGCTGCACAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:12647640‑M2/1‑63 (MQ=255) aaaGTGCTGCAAGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg < 1:4751661‑M2/68‑6 (MQ=255) aaaGTGCTGCAAAGCACAGACCACCCACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:24444379‑M2/1‑63 (MQ=255) aaaGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg < 1:2072735‑M2/68‑6 (MQ=255) aaaGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaag > 1:26726689‑M2/1‑63 (MQ=255) aaaGTCCTCCAAATCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:352627‑M2/1‑63 (MQ=255) aaGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGgcaaggt < 1:23426482‑M1/68‑8 (MQ=255) gctgcAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCggg > 1:30187438/1‑68 (MQ=40) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCgggg > 1:2310806/1‑64 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:14084098/1‑68 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:32523903/1‑68 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:26687737/1‑68 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:15406535/1‑68 (MQ=35) aaaGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:22228415/1‑68 (MQ=35) aGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa > 1:5621256/1‑68 (MQ=31) acaGACCACCCACGCGGGAATAGCTCAGTTGGTAGCGCACGACCTTGCcaaggtcgtgctctacca > 1:17128871‑M2/1‑48 (MQ=255) acaGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaag < 1:32294238‑M2/52‑5 (MQ=255) ccaccCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg < 1:4780700‑M2/48‑6 (MQ=255) cccAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctat > 1:9584895‑M2/1‑40 (MQ=255) cccAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctat > 1:17097759‑M2/1‑40 (MQ=255) gggAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctattcccg > 1:32339264‑M2/1‑33 (MQ=255) tCAGTTGGTAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtgg > 1:31788040‑M1/1‑23 (MQ=255) tCAGTTGGTAGAGCACGACCTTGgcaagggcgtgctctaccaactgagctattcccgctggggtgg > 1:27094488‑M1/1‑23 (MQ=255) tAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattaccgcttgggtggtctgtgcttt > 1:30044770‑M1/1‑15 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAg > 1:33425312/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAg > 1:12390066/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAg > 1:27313875/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAg > 1:18311535/1‑68 (MQ=31) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATT‑TTGAAAGt > 1:8408372/1‑68 (MQ=18) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAga > 1:29940719/1‑67 (MQ=9) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAg < 1:32201759/67‑1 (MQ=31) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:16655075/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:2117957/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:8028171/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:3888640/68‑1 (MQ=33) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:19899892/68‑1 (MQ=33) agagCACGACCTTGCCAAGGGCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGt < 1:13989586/68‑1 (MQ=18) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATGTTCAAAGt > 1:9008459/1‑68 (MQ=1) aCGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgaagc > 1:23417356‑M1/1‑9 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGCGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCt < 1:14492495/66‑1 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAGTGATga > 1:31524399/1‑67 (MQ=11) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCt < 1:9559551/66‑1 (MQ=39) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCt < 1:21298329/66‑1 (MQ=39) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCt < 1:8191307/66‑1 (MQ=39) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:28448118/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:28210627/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:3112373/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:13095662/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:3305436/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:3396871/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt > 1:2520314/1‑68 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:10935763/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:16028776/68‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGt < 1:17628555/68‑1 (MQ=40) gACCTTGgctagttcgtgctcacccacctgagctattcccgcttgggtggtctgtgctttgcagcact < 1:319172‑M1/68‑62 (MQ=255) gACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcact < 1:28082098‑M1/68‑62 (MQ=255) gACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcact < 1:21698891‑M1/68‑62 (MQ=255) gACCTCGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTaa < 1:25495491/68‑1 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATT‑TTTAAATTGCTGTAAg > 1:32409997/1‑68 (MQ=14) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTTAAAGAGATGTaat > 1:18646874/1‑67 (MQ=11) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAg > 1:4204305/1‑68 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGATTTAAg > 1:11995522/1‑68 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑ATGAAAGTGATGTAAg > 1:13749874/1‑68 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcacttt < 1:720787‑M1/68‑64 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcacttt > 1:13966984‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcactt < 1:34480071‑M1/67‑63 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtgggtggtctgtgctttgcagcacttt > 1:27642100‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaacagagctattcccgcgtgggtggtctgtgcgttccagc > 1:17967225‑M1/1‑5 (MQ=255) ccTTGCCAAGGTCGTGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:29350995/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:24165092/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:7645645/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:6877063/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:14938442/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:516646/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:11782533/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:22739700/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:3469525/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:25390969/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:2729606/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:13138351/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:31416440/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:30530927/68‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGATTCCCGCTCCAAAAT‑TTGAAAGTGCAGTAAgg < 1:1904716/68‑1 (MQ=255) ccTTCCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAgg < 1:25628168/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGATAGTGCTGTAAgg > 1:7488974/1‑67 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTa > 1:297074/1‑64 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAGGc < 1:8678602/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAGGc < 1:10044282/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAGGc < 1:24706949/68‑1 (MQ=255) ttGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcacttttc > 1:25201751‑M1/1‑3 (MQ=255) ggcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcacttttcaa > 1:34142490‑M1/1‑1 (MQ=255) ggcaaggtcgtgctctaccaactcagctattcccgcttgggtggtctgtgctttgcagcacttttcaa < 1:32960752‑M1/68‑68 (MQ=255) gCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAGGcaca < 1:221115/68‑1 (MQ=255) gCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAGGcaca < 1:29441771/68‑1 (MQ=255) | ATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAAT‑TTGAAAGTGCTGTAAGGCACA > CP009273/4382255‑4382389 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |