| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4538708 | 416 (1.000) | 20 (0.060) | 8/94 | NT | 5.8% | coding (84/903 nt) | fimH | minor component of type 1 fimbriae |
| ? | CP009273 | = 4538723 | 300 (0.860) | coding (99/903 nt) | fimH | minor component of type 1 fimbriae | |||||
Only 100 of 179 total aligned reads displayed.
GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4538634‑4538708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccaatAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC < CP009273/4538723‑4538657 GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAA > 1:27231212/1‑67 TTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC > 1:29286269/1‑68 TTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC > 1:18631955/1‑68 TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCG < 1:10383727/68‑1 TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCG < 1:34350107/68‑1 TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCG < 1:33069890/68‑1 TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCG < 1:23373931/68‑1 TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCG < 1:20635403/68‑1 TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC < 1:29855440/67‑1 TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC < 1:22708563/67‑1 TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC < 1:32713550/67‑1 TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC < 1:17873612/67‑1 TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACC < 1:15589854/67‑1 ATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGC < 1:20971947/68‑1 ATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGC < 1:26436184/68‑1 TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA > 1:31061051/1‑68 TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA > 1:5792964/1‑68 TACCCTGTTCGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA < 1:19446584/68‑1 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCTGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:33626064/1‑68 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:8041493/1‑68 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:23957960/1‑68 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:16209628/1‑68 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:8471713/1‑68 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:5660133/1‑68 CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT > 1:23817773/1‑68 CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT > 1:23150355/1‑68 CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT > 1:11050849/1‑68 CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT > 1:2998680/1‑68 CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT > 1:13525681/1‑68 CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT > 1:879295/1‑68 CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT < 1:18414381/68‑1 AATGCCTGGTCATTCGCCTGTATAACCGCCAAGTGGGGTAGCGGTACCATTGGCGGTGTTACAGGCGA > 1:8979179/1‑68 AATGCCTGGTCATTCGCCTGTAAAACCGCCAAGAGGGATAGCGGTACCTTTGGCGGTTTTACAGGggt > 1:6160979/1‑65 CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGGTAGGGGTACGATTGGCGGTGTTACAGGCGAATG > 1:18987202/1‑67 CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTTCCATTGGCGGTTTTACAGGCGAATG > 1:11216808/1‑67 CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGCATG > 1:29056578/1‑67 CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATG > 1:12099247/1‑67 GTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAG > 1:3492454/1‑68 CGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTT > 1:26540590/1‑68 CGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTT > 1:5441356/1‑68 GCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTT > 1:32270466/1‑67 GCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTT > 1:30350463/1‑67 TGTAAAACCGCCAATAGGGATAGCGGTACCATTGGGGGTTTTACAGGCGAATGACCAGGCATTTACCG > 1:21335087/1‑68 TGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACC > 1:9177660/1‑67 AACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCA > 1:10740768/1‑67 ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC < 1:34092122/68‑1 ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC < 1:30495245/68‑1 ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC < 1:13822347/68‑1 CCGCCAATAGGGATAGCGGTACCATTGTCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:25877503/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGCCCAGGCATTTACCGACCAGCC < 1:3497748/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:4710268/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:28050157/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:31211075/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:825387/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:33256113/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:7371803/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:33818713/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:5149651/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:34521091/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:24788451/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:12452797/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:18504321/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:19684808/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:20589831/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:20841714/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:16863604/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:24960442/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:25330079/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:27833687/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:13660412/68‑1 CGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGA < 1:17600448/46‑1 GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA < 1:26578307/68‑1 GCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA < 1:2854433/68‑1 CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACGAGGCATTTACCGACCAGCCCA > 1:14584152/1‑67 CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA > 1:14776915/1‑67 CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA > 1:33791368/1‑67 CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA > 1:10872602/1‑67 CCAATAGGGATAGCGGTACCATTGGAGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA > 1:7096694/1‑67 CAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCAT < 1:28000319/67‑1 CAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCAT < 1:17769761/67‑1 CAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCAT < 1:19263448/67‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCTAATGACCAGGCATTTACCGACCAGCCCATCA < 1:9660504/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:21459390/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:29705000/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:27556474/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:1551170/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:16475371/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:7627244/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:10264542/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:4423576/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:17800720/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:4549038/68‑1 ATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA > 1:6638586/1‑67 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC < 1:6810943/68‑1 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC < 1:4949487/68‑1 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC < 1:2466525/68‑1 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC > 1:18071750/1‑68 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC < 1:30645237/68‑1 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC > 1:12970249/1‑68 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC > 1:5402197/1‑68 GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4538634‑4538708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccaatAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC < CP009273/4538723‑4538657 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |