New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 442683334 (0.810)31 (0.090) 10/90 NT 9.2% coding (479/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 = 442722 343 (1.030)coding (440/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 149 total aligned reads displayed.

TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/442606‑442683
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgcgccgcCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  <  CP009273/442722‑442657
                                                                                                                                                
TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              <  1:13522881/68‑1
  AAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:4561804/1‑66
  AAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:7068613/1‑66
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           <  1:12198484/68‑1
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:13877504/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:20033046/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:17721054/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:6429189/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:32754690/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:148321/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:26689182/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:8648408/1‑65
   AGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                              >  1:25045831/1‑65
    GCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           >  1:8662872/1‑67
    GCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                           >  1:23606379/1‑67
         AAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCC                                                                      <  1:2067667/67‑1
                     CATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCC                                                                      <  1:1583810/55‑1
                           AGTGAGGCATCTGCCACAGGCTGAAGAAAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGT                                                   >  1:17518808/1‑68
                                   ATCTGCCACAGGCTGAAGATAGCCAGCAGGTTCGCTGCGCCGCCGGTGCTCGGCTACTGTGCGGTAA                                            >  1:10419295/1‑67
                                   ATCTGCCACAGGCTGAAGATAGCCAGCAGGCTCGCTGCGCCGCCGGGGCTCGGCGACGGTGCGGTAc                                            >  1:10460160/1‑66
                                          ACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTTACCGGTGAG                                    >  1:11200889/1‑68
                                          ACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTACCCGGTGAG                                    >  1:28698975/1‑68
                                          ACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAG                                    >  1:31699293/1‑68
                                          ACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAG                                    >  1:14031088/1‑68
                                            AGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGT                                   >  1:20526092/1‑67
                                              GCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCG                                >  1:25042091/1‑68
                                              GCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCG                                >  1:7672510/1‑68
                                              GCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCG                                >  1:13185944/1‑68
                                              GCTGAAGATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTAATGTGCGGTAACCGGTGAGTTCG                                >  1:12795345/1‑68
                                                    GATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTTACCGGTGAGTTCGATAGCG                          >  1:26078213/1‑68
                                                    GATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG                          >  1:23480987/1‑68
                                                    GATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG                          >  1:9501765/1‑68
                                                    GATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG                          >  1:1095374/1‑68
                                                    GATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG                          >  1:16536214/1‑68
                                                    GATAGCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTAATGTGCGGTAACCGGTGAGTTCGTTAGCG                          >  1:15056834/1‑68
                                                    GATAGCCAGCAGGATCGCTGCGCCGCCGGGGGTCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCG                          >  1:30488875/1‑68
                                                        GCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGC                      >  1:4905855/1‑68
                                                        GCCAGCAGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGC                      >  1:34067153/1‑68
                                                        GCCAGCAGGATCGCAGCGCCGCCGGTGATCGGCTACTGTGCGGTAAGCGGTGAGTTCGATAGCGCCGC                      >  1:842051/1‑68
                                                              AGGATCGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGc                 <  1:13127114/67‑2
                                                                   CGCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:5583053/1‑66
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATTGCGGCGCAGCGATCCT             >  1:8413534/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGCTCCT             >  1:30997983/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:26687767/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:25415859/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:11894180/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:24882351/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:24679142/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:28518406/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:30516135/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:31597179/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:7640802/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:1622143/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:170887/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCT             >  1:4661592/1‑65
                                                                    GCTGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCCATCCT             >  1:19671364/1‑65
                                                                      TGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTG         >  1:10225767/1‑67
                                                                      TGCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGAGCCTGCTG         >  1:21686640/1‑67
                                                                       GCGCCGCCGGTGATCGGCTTCTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:5503894/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:25666196/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:9833533/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:1422368/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:16514121/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:5009146/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:18474688/68‑1
                                                                       GCGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:25457754/68‑1
                                                                        CGCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGC       <  1:6555381/67‑1
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:18817934/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:12738128/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:13002550/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:2311106/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:2270577/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:26339468/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:22676940/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:32716522/1‑68
                                                                         GCCGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTA     >  1:2251409/1‑68
                                                                           CGCCGGTGATCGGCTACTTTGCGGTAACCGTTTAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:22597920/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGTTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTAT    <  1:25869250/67‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:13835107/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:15709032/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:15941557/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:6824052/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:1030104/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:10187136/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:21201990/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:2461928/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:26953630/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:24212288/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:33591422/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:33351500/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:31430896/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:29864494/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:2975452/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:29325687/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:29088808/68‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTAT    <  1:34353772/67‑1
                                                                           CGCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGCTCGATAGCGGCGCAGCGATCCTGCTGGCTATC   <  1:23737832/68‑1
                                                                            GCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  <  1:27432717/68‑1
                                                                            GCCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  >  1:24201704/1‑68
                                                                             CCGGTGATCGGCTACTGTGCGGTAACCTGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTAT    <  1:16884012/65‑1
                                                                                                                                                
TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/442606‑442683
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgcgccgcCGGTGATCGGCTACTGTGCGGTAACCGGTGAGTTCGATAGCGGCGCAGCGATCCTGCTGGCTATCT  <  CP009273/442722‑442657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.