| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1171846 | 298 (0.720) | 19 (0.050) | 10/96 | NT | 7.1% | coding (964/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein |
| ? | CP009273 | = 1171942 | 244 (0.690) | coding (1060/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein | |||||
TAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1171772‑1171846‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccgCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCCA < CP009273/1171942‑1171878 TAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCC > 1:14406027/1‑68 AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCA > 1:32801024/1‑68 AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCA > 1:13752209/1‑68 AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCA > 1:6566463/1‑68 AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCA > 1:21549167/1‑68 AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCA > 1:3612453/1‑68 AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCA > 1:21642937/1‑68 AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCA > 1:4483268/1‑68 AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCA > 1:5910277/1‑68 gagCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:33744314/64‑1 gagCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGGGCAAGGGGCCAGC < 1:25174860/64‑1 gagCCTGCAAACGCAAGGCTTAACTCCGCCACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCG < 1:33076141/65‑1 GATCCTGCAATCGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:14743452/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCTACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:7503446/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCG < 1:30485483/68‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:1010041/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:21326034/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:17912589/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:32266074/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:32804170/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:16871265/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:10455085/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:131397/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:8903662/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:12078222/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:12533032/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:12635590/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:9428711/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:13439107/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:13462060/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:6813662/1‑67 ATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGgg > 1:2131547/1‑65 ATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCG > 1:13284065/1‑67 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:6249708/1‑68 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:14575663/1‑68 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:19943610/1‑68 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:32677649/1‑68 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:4108348/1‑68 CCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCCG > 1:22422717/1‑68 TCCGCGCCAAATCATGATGGTCTTTATGGTGCAAGGGGCCCGCGCCGCGCCAGCGAGCAGGACGCCGg > 1:32739405/1‑67 ATGGTCTTTATGGTGCAAGGGGCCAGCGCCGCGCGATCAAGCAGGACGCCGCTTATCGGCCTCAGATT > 1:6268246/1‑68 ATGGTCTTTATGGTGCAAGGGGCCAGCGCCGCGCCCTCAAGCAGGACGCCGATTATCGGGATGAGGTT > 1:4725075/1‑68 ATGGTCTTTATGGTGCAAGGGGCCAGCGCCGCGCCCTCAAGCAGGACGCCGATTATCGGCATCAGATT > 1:6661651/1‑68 ATGGTCTTTATGGTGCAAGGGGCCAGCGCCGCGCCATCAGGCAGGACGCCGATGATCGGCATCAGATT > 1:32946040/1‑68 ATGGTCTTTATGGTGCAAGGGGCCAGCGCCGCGCCAGCAAGCAGGCCGCCGGGTATCGGCATCAGATT > 1:27510071/1‑68 TGGTCTTTATGGTGCAAGGGGCCAGCGCCGCGCCAAAACGCAGGAAGGCGATTATCGGCATCAGATTA > 1:15757933/1‑68 GGTCTTTATGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTAT > 1:12745092/1‑68 TCTTTATGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTT > 1:32973191/1‑68 TCTTTATGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTT > 1:13151392/1‑68 ATGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTG > 1:6575653/1‑68 ATGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGAGTATCGGCATCAGATTATTTAACTG > 1:2226419/1‑68 TGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTG > 1:7484216/1‑67 GGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCTTCAGATTATTTAACTG > 1:12963777/1‑66 GGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTG > 1:4032537/1‑66 GGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGAGTATCGGCATCAGAGTATTTAACTG > 1:11086629/1‑66 GTGCAAGGGGCCAGCGCCGCGCCCTCAAGCAGGCCGCCGATTATCGGCATCAGATTTTTTAACTG > 1:29263941/1‑65 GCAAGGGGCCCGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTG > 1:20017282/1‑67 GCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTG > 1:3880985/1‑67 GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGC > 1:17884878/1‑68 GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGC > 1:809327/1‑68 cccGCGCCGCGCCATCAAGAAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGG > 1:17699666/4‑68 CCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGG > 1:10951608/1‑68 CAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGG > 1:7266548/1‑67 CAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGG > 1:6964833/1‑67 CAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGG > 1:25529823/1‑67 CAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCAGCAGATTATTTAACTGGCTGGCAAGCAGG > 1:11114895/1‑67 aggGCCGCGCCATCAAGCAGGACGCCGATTATGGGCATCAGATTATTTAACTGGCTGGCAAGCAGGG < 1:33442620/64‑1 AGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGC > 1:445460/1‑68 AGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGC > 1:8022619/1‑68 AGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGC > 1:29842679/1‑68 AGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGC > 1:7626299/1‑68 AGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGC > 1:32525395/1‑68 AGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGG < 1:21885819/67‑1 AGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGG < 1:34215635/67‑1 GCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCCAGCAGGGC > 1:26990429/1‑67 CGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCG > 1:11171831/1‑67 CGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTAGCTGGCAAGCAGGGCG > 1:16721854/1‑67 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCCGCTTATTTAACTGGCTGGCCCGCAGGGCGC > 1:25971481/1‑67 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:11884659/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:9475268/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:7084835/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:13690178/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:15905032/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:5166805/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:3339080/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGC < 1:23340270/67‑1 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCG < 1:30054966/66‑1 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGC < 1:4416942/65‑1 CCGCGCCATCAAGCAGGACGCCGATTATCGGCTTCAGATTATTTAACTGGCTGGCAAGCAGGGCGCCA > 1:8498145/1‑68 TAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1171772‑1171846‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccgCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCCA < CP009273/1171942‑1171878 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |