| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1182535 = | NA (NA) | 4 (0.010) | 4/90 | NT | NA | intergenic (+9/+40) | pepT/roxA | peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase |
| ? | CP009273 | 1182560 = | NA (NA) | noncoding (22/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 149 total aligned reads displayed.
GCTGGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1182611‑1182535‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGC > CP009273/1182560‑1182625 GCTGGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACAT > 1:9243720/1‑68GCTGGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACAT > 1:11412235/1‑68GCTGGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACAT > 1:33581926/1‑68GCTGGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACAT > 1:16332419/1‑68 TGGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGC < 1:25290842/68‑1 TGGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGC < 1:23275866/68‑1 TGGTCAATAGCGGGTATTGGGTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGC < 1:334636/68‑1 GGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCC < 1:21064375/68‑1 GGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCC < 1:25881445/68‑1 GGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCC < 1:26281122/68‑1 GGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCC < 1:21909617/68‑1 GGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCC < 1:18793512/68‑1 GGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCC < 1:10332910/68‑1 TCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGC > 1:9203308/1‑68 TCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGC > 1:26795715/1‑68 TCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGC > 1:2825994/1‑68 TCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGC > 1:1813100/1‑68 TCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGC > 1:11960872/1‑68 TCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGC > 1:12391749/1‑68 TCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCG < 1:14613293/67‑1 CAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGC < 1:22576767/67‑1 AATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCAT < 1:9600589/68‑1 AATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCAT < 1:22298008/68‑1 AATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCAT < 1:21368768/68‑1 ATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC < 1:409271/68‑1 ATAGCGGGTATTGGTTCTTAGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCAT > 1:22848597/1‑67 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:500198/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:15699097/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:26418775/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:2476973/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:8135985/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:16526938/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:24405775/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:30088053/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:30743469/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:23836082/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:31193176/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:11479246/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:31696972/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:6167186/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:18281043/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:19513297/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:19780684/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:20449659/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:34341042/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:5496084/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:21400148/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:21783070/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:8589574/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:1852974/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:32590828/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:22230627/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:32423132/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCAGCATC > 1:30762616/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCAAATGCCGCATC > 1:16117791/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGCCATCACATGCCGCATC > 1:7078573/1‑66 AGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGCATTTAAGCCGGATGCGGCATCACATGCCGCATC > 1:3121186/1‑66 ATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATCCGGCTTAAA < 1:13095805/68‑1 AGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATCCGGCTTAAATCCAAACTTACCC < 1:10196098/68‑1 ATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGCCCAGCGCCGC > 1:27076551/1‑68 ATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGC > 1:25939926/1‑68 ATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGC > 1:15255265/1‑68 ATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGC > 1:27041146/1‑68 ATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGC > 1:16567021/1‑68 ATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGC > 1:24429987/1‑68 ATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGC > 1:29030985/1‑68 ATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGC > 1:21182360/1‑68 ATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGC > 1:24155356/1‑68 ATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGC > 1:23290276/1‑68 GCCGCATCCGGCTTAAATCCAGACTTACCCTTCGAAGAACCAATACCCGCTATTGACAAGCGCCGCGA > 1:19769316/1‑68 GCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGCACCAATACCCGCTATTGACCAGCGCCGCGc > 1:25171017/1‑67 GCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTGTTGACCAGCGCCGCGA > 1:20154843/1‑68 GCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGA > 1:10023437/1‑68 GCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGA > 1:11168284/1‑68 GCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGA > 1:24550917/1‑68 GCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGA > 1:27832174/1‑68 GCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGA > 1:29144001/1‑68 CCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGA > 1:22099680/1‑67 CCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGA > 1:24223018/1‑67 CGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGC > 1:4159428/1‑68 CGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGC > 1:2486271/1‑68 CGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGC > 1:11069033/1‑68 CGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGC < 1:8827902/68‑1 CGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGC < 1:2697947/68‑1 CGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGC > 1:6937059/1‑68 CGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGC > 1:23600054/1‑68 CGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGC > 1:3495877/1‑68 CGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGC > 1:22204076/1‑68 CGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAG < 1:22593726/67‑1 ATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATC > 1:3748737/1‑68 ATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCAT < 1:2999734/67‑1 ATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCAT < 1:21995353/67‑1 ATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCAT < 1:3260993/67‑1 TCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCG < 1:23044735/68‑1 TCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATC > 1:3615300/1‑67 TCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATC > 1:14365088/1‑67 CCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGC > 1:19294207/1‑68 CCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGC > 1:6015103/1‑68 CCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGC > 1:13078327/1‑68 CCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGC > 1:2232168/1‑68 GCTGGTCAATAGCGGGTATTGGTTCTTCGAAGGGTAAGTTTGGATTTAAGCCGGATGCGGCATCACATGCCGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1182611‑1182535‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGC > CP009273/1182560‑1182625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |