| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1182535 = | NA (NA) | 4 (0.010) | 4/90 | NT | NA | intergenic (+9/+40) | pepT/roxA | peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase |
| ? | CP009273 | 1182560 = | NA (NA) | noncoding (22/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 364 total aligned reads displayed.
CCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGC > CP009273/1182493‑1182625 | ccGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg < 1:30482542/68‑1 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:170982/1‑66 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:16387006/1‑66 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:25286218/1‑66 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:37460/1‑66 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:13388614/1‑66 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGc < 1:20907000/68‑1 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGc < 1:29248750/68‑1 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGc < 1:5743710/68‑1 (MQ=255) aTTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCtt > 1:10586639/1‑68 (MQ=255) aTTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCtt > 1:32670088/1‑68 (MQ=255) tGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaa > 1:2355969/1‑68 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:25802437/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:26567146/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa > 1:8133980/1‑68 (MQ=255) gTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaa > 1:7640044/1‑68 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:3304435/67‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:11662823/67‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:27605385/67‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaa < 1:32422849/66‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaa < 1:12012215/66‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaa < 1:17604386/66‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCCTAATGTGATGCCGCATCCGGCTTAAATCCaa < 1:15975314/66‑1 (MQ=255) ggCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTa > 1:29671483/1‑67 (MQ=255) gcgcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAc > 1:20615298/1‑67 (MQ=255) agggtaagtttggatttaagccggatgcggcatcacatgccgcatccGGCTTAAATCCAAACTTAccc < 1:10196098‑M2/21‑1 (MQ=255) gcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCt > 1:23129588/1‑68 (MQ=255) aaCGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTc < 1:24990217/68‑1 (MQ=255) cGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCga < 1:9425041/68‑1 (MQ=255) ggAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaa > 1:22134069/1‑68 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaagaa < 1:16319386/68‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaagaa < 1:11464000/68‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaagaa < 1:22731438/68‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaaga < 1:20675270/67‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaaga < 1:23903485/67‑1 (MQ=255) tAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc > 1:21260029/1‑68 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGTCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:4650146/66‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc < 1:27307572/67‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAcc < 1:14002545/67‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:9742201/66‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:21585949/66‑1 (MQ=255) aGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCaa > 1:33563148/1‑68 (MQ=255) tttaagccGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAAt < 1:13095805‑M1/60‑1 (MQ=255) gCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGACCCAAt > 1:7112285/1‑68 (MQ=255) gAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAAt < 1:28786041/66‑1 (MQ=255) gAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAc < 1:21887208/68‑1 (MQ=255) gAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAc < 1:6405363/68‑1 (MQ=255) gggATGCGGCATGTGATGCGGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCggt > 1:15092399/1‑66 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAACCTTACCCTTCGAAGAACCAATACCCGCt > 1:32181587/1‑68 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGcg > 1:12643676/1‑67 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:3253923/1‑68 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:2792647/1‑68 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:15404761/1‑68 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:14387450/1‑68 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:21950285/1‑68 (MQ=255) GATGCTGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:30762616‑M1/1‑66 (MQ=255) GATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:5496084‑M1/1‑66 (MQ=255) GATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:31153897‑M1/1‑66 (MQ=255) GATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:34341042‑M1/1‑66 (MQ=255) GATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:30088053‑M1/1‑66 (MQ=255) GATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:16814683‑M1/1‑66 (MQ=255) GATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:3595365‑M1/1‑66 (MQ=255) GATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:500198‑M1/1‑66 (MQ=255) GATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:24405775‑M1/1‑66 (MQ=255) GATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:2476973‑M1/1‑66 (MQ=255) GATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:19985873‑M1/1‑66 (MQ=255) GATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTAt < 1:409271‑M1/68‑1 (MQ=255) GCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa > 1:1813100‑M1/1‑68 (MQ=255) GCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa > 1:26795715‑M1/1‑68 (MQ=255) GCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa > 1:9203308‑M1/1‑68 (MQ=255) GCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa > 1:26184221‑M1/1‑68 (MQ=255) CGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGa < 1:14613293‑M1/67‑1 (MQ=255) GGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGAcc < 1:18793512‑M1/68‑1 (MQ=255) GGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGAcc < 1:21064375‑M1/68‑1 (MQ=255) GGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGAcc < 1:26281122‑M1/68‑1 (MQ=255) GGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGAcc < 1:10332910‑M1/68‑1 (MQ=255) GGCATGTGATGCCGCATACGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGAcc < 1:1104128‑M1/68‑1 (MQ=255) ATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAgc > 1:11373753‑M1/1‑68 (MQ=255) gtgATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAgcgc < 1:26463952/68‑1 (MQ=255) gtgATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAgcgc < 1:34087090/68‑1 (MQ=255) gtgATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAgcgc < 1:12336683/68‑1 (MQ=255) tgATGCCGCATCCGACTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGcgcc > 1:19760248/1‑68 (MQ=255) gATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGcgcc < 1:27012126/67‑1 (MQ=255) atgccgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGCCCAGcgccgc > 1:27076551‑M2/12‑68 (MQ=255) atgccgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGcgccgc > 1:23290276‑M2/12‑68 (MQ=255) atgccgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGcgccgc > 1:24155356‑M2/12‑68 (MQ=255) atgccgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGcgccgc > 1:28446961‑M2/12‑68 (MQ=255) gccgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTGTTGACCAGCGCCGCGa > 1:20154843‑M2/10‑68 (MQ=255) gccgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGa > 1:10023437‑M2/10‑68 (MQ=255) gccgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGa > 1:24550917‑M2/10‑68 (MQ=255) cgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAg < 1:22593726‑M2/60‑1 (MQ=255) cgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGc > 1:3495877‑M2/8‑68 (MQ=255) cgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGc > 1:6937059‑M2/8‑68 (MQ=255) cgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGc < 1:8827902‑M2/61‑1 (MQ=255) cgcatccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGc > 1:22204076‑M2/8‑68 (MQ=255) tccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATcg < 1:23044735‑M2/65‑1 (MQ=255) tccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATc > 1:31569439‑M2/4‑67 (MQ=255) ccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATcgc > 1:6015103‑M2/3‑68 (MQ=255) ccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATcgc > 1:19294207‑M2/3‑68 (MQ=255) ccGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATcgc > 1:2232168‑M2/3‑68 (MQ=255) | CCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCTATTGACCAGCGCCGCGAGCATCGC > CP009273/1182493‑1182625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |