| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1182535 = | NA (NA) | 4 (0.010) | 4/90 | NT | NA | intergenic (+9/+40) | pepT/roxA | peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase |
| ? | CP009273 | 1182560 = | NA (NA) | noncoding (22/24 nt) | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 431 total aligned reads displayed.
TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCT > CP009273/1182468‑1182601 | ggAAAACGCGGTGCAGGTGATCGGCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAggg < 1:22126888/68‑1 (MQ=255) gatgctcgcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGa > 1:3615300‑M1/65‑67 (MQ=255) gatgctcgcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGa > 1:31569439‑M1/65‑67 (MQ=255) gatgctcgcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGa > 1:14365088‑M1/65‑67 (MQ=255) aaaaaGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAt > 1:7253393/1‑68 (MQ=255) aaaaaGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAt > 1:4837546/1‑68 (MQ=255) aaaaaGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAt > 1:6686433/1‑68 (MQ=255) atgctcgcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGAt < 1:3260993‑M1/4‑1 (MQ=255) aaaaGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAt > 1:1463071/1‑67 (MQ=255) aaaaGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAt > 1:8356859/1‑67 (MQ=255) aaaaGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAt > 1:16730806/1‑67 (MQ=255) aaaaGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGAt > 1:7107780/1‑67 (MQ=255) aaaaGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATg < 1:17876313/68‑1 (MQ=255) gctcgcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGATGCg > 1:3495877‑M1/62‑68 (MQ=255) gctcgcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGATGCg > 1:22204076‑M1/62‑68 (MQ=255) aaGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCg < 1:28775302/68‑1 (MQ=255) tcgcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGATGCgg > 1:24223018‑M1/60‑67 (MQ=255) tcgcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGATGCGGc > 1:27026695‑M1/60‑68 (MQ=255) tcgcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGATGCGGc > 1:10023437‑M1/60‑68 (MQ=255) tcgcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGATGCGGc > 1:11168284‑M1/60‑68 (MQ=255) tcgcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGATGCGGc > 1:22705584‑M1/60‑68 (MQ=255) tcgcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGATGCGGc > 1:23093783‑M1/60‑68 (MQ=255) gcgcggcgctggtcaatagcgggtattggtgcttcgaagggtaagtttggatttaagccGGATGCGGc > 1:25171017‑M1/60‑68 (MQ=255) gCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGc > 1:20419763/1‑68 (MQ=255) gCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGc > 1:22998230/1‑68 (MQ=255) gCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGc < 1:16525017/68‑1 (MQ=255) gCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGc > 1:24653076/1‑68 (MQ=255) cGGTGCAGGTGATCGTCCGTATTGCCGCGTTTAAGGGGCCACGGGAGTTAGCGGAAAGGGGTgggggg > 1:31439604/1‑66 (MQ=255) ggTGGAGGGGATCGTCCGTATTGCCGAGTTTACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGc < 1:29597863/66‑1 (MQ=255) ggTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGc < 1:23939676/66‑1 (MQ=255) ggTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCAt < 1:625852/68‑1 (MQ=255) gcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGATGCGGCAt > 1:21243761‑M1/58‑68 (MQ=255) gcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGATGCGGCAt > 1:24429987‑M1/58‑68 (MQ=255) gcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGATGCGGCAt > 1:28446961‑M1/58‑68 (MQ=255) gcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGATGCGGCAt > 1:32442854‑M1/58‑68 (MQ=255) gcggcgctggtcaatagcgggtattggttcttcgaagggtaagtttggatttaagccGGATGCGGCAt > 1:9222443‑M1/58‑68 (MQ=255) aGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGa < 1:13054078/67‑1 (MQ=255) ggTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGAt > 1:14520977/1‑67 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGcc > 1:12535100/1‑68 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGcc > 1:27317418/1‑68 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGcc > 1:26833015/1‑68 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGcc > 1:6454194/1‑68 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGcc > 1:13781258/1‑68 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGcc > 1:1817687/1‑68 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGc < 1:23349025/67‑1 (MQ=255) tGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCAGCATGTGATGcc > 1:33355458/1‑68 (MQ=255) aTCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGc > 1:16032642/1‑68 (MQ=255) aTCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGc > 1:24972308/1‑68 (MQ=255) aTCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGc > 1:27200191/1‑68 (MQ=255) tCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGc < 1:1951712/67‑1 (MQ=255) gTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCAt > 1:32248493/1‑67 (MQ=255) ccGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg < 1:30482542/68‑1 (MQ=255) cGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:30975485/1‑67 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:170982/1‑66 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCg > 1:13388614/1‑66 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGc < 1:5743710/68‑1 (MQ=255) gTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGc < 1:29248750/68‑1 (MQ=255) tGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaa > 1:2355969/1‑68 (MQ=255) tGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaa > 1:30674166/1‑68 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:25802437/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa < 1:17510522/68‑1 (MQ=255) gCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTaaa > 1:8133980/1‑68 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:28036797/1‑67 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:2655987/1‑67 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:11611370/1‑67 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:10706681/1‑67 (MQ=255) cGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAAt > 1:14071945/1‑67 (MQ=255) gTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaa > 1:7640044/1‑68 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:27605385/67‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:11004938/67‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:3304435/67‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaa < 1:32054284/66‑1 (MQ=255) tAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaa < 1:12012215/66‑1 (MQ=255) aaaCGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:5877144/66‑1 (MQ=255) cGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACtt > 1:20612682/1‑67 (MQ=255) ggCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTa > 1:29671483/1‑67 (MQ=255) ggCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACATa > 1:26292211/1‑67 (MQ=255) gcgcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTAc > 1:4186807/1‑67 (MQ=255) gcgcAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCACCCGGCTTAAATCCAAACTTAc > 1:565437/1‑67 (MQ=255) aaCGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCtt < 1:30025292/67‑1 (MQ=255) ggAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaa > 1:15691202/1‑68 (MQ=255) aaGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCGAAACTCACCCTTCgaaga < 1:34088651/68‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaagaa < 1:52880/68‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaagaa < 1:16319386/68‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaagaa < 1:11464000/68‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaaga > 1:20092549/1‑67 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaaga < 1:20675270/67‑1 (MQ=255) aGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCgaaga < 1:9694245/67‑1 (MQ=255) tAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAACTCCAAACTTACCCTTCGAAGAAcc > 1:21012411/1‑68 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGTCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:4650146/66‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAAc < 1:21585949/66‑1 (MQ=255) aaGCGAAAAGGGATGCGGCATGTGATGCCGCATACGGCTTAAATCCAAACTTACCCTTCGAATAAcc < 1:19102206/67‑1 (MQ=255) gCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAAt > 1:34475203/1‑68 (MQ=255) cGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCaaa < 1:25417904/46‑1 (MQ=255) aaaGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAccc < 1:7465394/68‑1 (MQ=255) aaaGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATAccc < 1:8860737/68‑1 (MQ=255) gggATGCGGCATGTGATGCGGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCggt > 1:15092399/1‑66 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:21950285/1‑68 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:19711026/1‑68 (MQ=255) gggATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCt > 1:10574729/1‑68 (MQ=255) | TGGAAAAAGCGGTGCAGGTGATCGTCCGTATTGCCGAGTTAACGGCGCAACGGAAGTAAGCGAAAAGGGATGCGGCATGTGATGCCGCATCCGGCTTAAATCCAAACTTACCCTTCGAAGAACCAATACCCGCT > CP009273/1182468‑1182601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |