| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1199277 = | 411 (0.990) | 42 (0.120) | 23/94 | NT | 11.4% | coding (554/558 nt) | ymfL | e14 prophage; putative DNA‑binding transcriptional regulator |
| ? | CP009273 | = 1289207 | 305 (0.880) | coding (225/618 nt) | tdk | thymidine kinase/deoxyuridine kinase | |||||
Only 100 of 177 total aligned reads displayed.
ACCTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1199351‑1199277‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgttcatgTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAACC < CP009273/1289207‑1289142 ACCTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACT < 1:24501500/68‑1ACCTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACT < 1:18954605/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACTGTATTGTGTTGTTAAACTGT < 1:23797106/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT > 1:1533419/1‑68 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:28290219/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:31093119/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:275598/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:20610318/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:17366044/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:32217667/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:21053376/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:33825749/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:3708640/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT > 1:13142449/1‑68 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:7761742/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:5751129/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:12387200/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:6863327/68‑1 CTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTCGCGAGCGACGGTAGTGTGTTGTTAAACTGT < 1:27096498/68‑1 TTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTT < 1:29062756/68‑1 GCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCAT < 1:20416500/68‑1 CTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCAT > 1:20064758/1‑67 CTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCAT > 1:15714573/1‑67 CTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCAT > 1:18998504/1‑67 TTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATG < 1:25114309/67‑1 CACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGC < 1:33209472/68‑1 CACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGC < 1:4911729/68‑1 GTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAA > 1:4460714/1‑67 ACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATC > 1:17243953/1‑67 AAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCA > 1:25376966/1‑68 AAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCA > 1:10843245/1‑68 AAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCA > 1:30275707/1‑68 AAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCA > 1:32058633/1‑68 AAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCAT < 1:24354991/66‑1 AAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCA < 1:22997988/65‑1 CAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAA > 1:1880515/1‑68 TCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGA < 1:32887677/68‑1 TGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAAT > 1:31330780/1‑68 GCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGG > 1:11624777/1‑68 GCGACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTG < 1:22696924/67‑1 GACGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGG < 1:5456258/66‑1 CGGTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAA < 1:8219961/68‑1 GTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAAT > 1:20121443/1‑68 GTAGTGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATGTTGGTTAAAT > 1:15879335/1‑68 TGTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATT > 1:10902784/1‑68 GTGTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTT > 1:19492254/1‑68 GTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTT > 1:5925455/1‑67 GTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTT > 1:14455414/1‑67 GTTGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTT > 1:19123834/1‑67 TGTTAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCA > 1:8674948/1‑68 TAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGTTTAAATAATTTTGCAGGC > 1:31781032/1‑68 TAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGC > 1:20233304/1‑68 TAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGC > 1:28455690/1‑68 TAAACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGC > 1:23715050/1‑68 ACTGTTTATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGAT > 1:25941639/1‑68 ACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGAT > 1:8614513/1‑68 ACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGAT > 1:1215473/1‑68 ACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGAT > 1:22088091/1‑68 ACTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGATAAAAAATTTTGCAGGAGA > 1:14878266/1‑67 CTGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG < 1:19887265/68‑1 tgaTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG < 1:7720090/64‑1 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGA < 1:31980313/68‑1 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGA < 1:4443599/68‑1 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG < 1:32139922/67‑1 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG < 1:16966049/67‑1 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG < 1:32583203/67‑1 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG < 1:17306189/67‑1 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG > 1:3402303/1‑67 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG < 1:13037821/67‑1 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG > 1:12667216/1‑67 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG < 1:10961066/67‑1 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG < 1:8996217/67‑1 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG < 1:9231662/67‑1 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG < 1:17982900/67‑1 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG < 1:21942963/67‑1 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG > 1:27087768/1‑67 TGTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATG < 1:27583070/67‑1 GTTCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGAC > 1:2816382/1‑68 TCATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAA < 1:4049250/68‑1 CATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAA < 1:8333059/68‑1 CATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAA < 1:19435259/68‑1 ATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAAC < 1:28807056/68‑1 ATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAAC < 1:23216624/68‑1 ATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAAC < 1:2252816/68‑1 ATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAAC < 1:8746888/68‑1 ATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAAC < 1:2148825/68‑1 ATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAAC < 1:11469394/68‑1 ATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAAC < 1:20603532/68‑1 ATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAAC < 1:2784414/68‑1 ATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAAC < 1:13093173/68‑1 ATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAAC < 1:14048183/68‑1 ATGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAA > 1:22613437/1‑67 TGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAACC < 1:20968513/68‑1 TGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAACC < 1:7616739/68‑1 TGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAACC < 1:30240125/68‑1 TGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAACC < 1:2192800/68‑1 TGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAACC < 1:34031762/68‑1 TGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAA > 1:6158398/1‑66 TGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAA > 1:13716734/1‑66 TGTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAA > 1:2994999/1‑66 ACCTTCGCTTTTCCACCCGGTACAGGAAGCGCAATCAGTTGCGAGCGACGGTAGTGTGTTGTTAAACTGTTCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1199351‑1199277‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgttcatgTTCCGCACGAATCTCATCAAATAATGATGAATTTTGGTTAAATAATTTTGCAGGCGATGACAAACC < CP009273/1289207‑1289142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |