| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1199277 = | 411 (0.990) | 42 (0.120) | 23/94 | NT | 11.4% | coding (554/558 nt) | ymfL | e14 prophage; putative DNA‑binding transcriptional regulator |
| ? | CP009273 | = 1289207 | 305 (0.880) | coding (225/618 nt) | tdk | thymidine kinase/deoxyuridine kinase | |||||
Only 100 of 644 total aligned reads displayed.
TAGGTTTGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGTAT > CP009273/1289140‑1289274 | taGGTTTGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGaa < 1:22868491/68‑1 (MQ=255)taGGTTTGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGaa < 1:31168245/68‑1 (MQ=255)taGGTTTGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGaa < 1:1162657/68‑1 (MQ=255)taGGTTTGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGaa < 1:31405584/68‑1 (MQ=255)taGGTTTGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGaa < 1:34180257/68‑1 (MQ=255)taGGTTTGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGaa < 1:34465089/68‑1 (MQ=255)taGGTTTGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGaa < 1:3515784/68‑1 (MQ=255) ggTTTGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAca < 1:20968513‑M2/68‑3 (MQ=255) ggTTTGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAca < 1:888222‑M2/68‑3 (MQ=255) gTTTGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcat < 1:9615677‑M2/68‑4 (MQ=255) tttGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcatg < 1:19435259‑M2/68‑5 (MQ=255) tttGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAca > 1:6084741‑M2/1‑64 (MQ=255) tCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcatgaaca < 1:4443599‑M2/68‑9 (MQ=255) cATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcatgaaca > 1:27087768‑M2/1‑59 (MQ=255) cATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcatgaaca < 1:21942963‑M2/67‑9 (MQ=255) cATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcatgaaca < 1:18623042‑M2/67‑9 (MQ=255) cATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcatgaaca < 1:17982900‑M2/67‑9 (MQ=255) cATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcatgaaca < 1:10961066‑M2/67‑9 (MQ=255) cATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcatgaaca < 1:12234131‑M2/67‑9 (MQ=255) cATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcatgaaca < 1:17111450‑M2/67‑9 (MQ=255) cATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcatgaaca < 1:33916978‑M2/67‑9 (MQ=255) cATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcatgaaca > 1:15780261‑M2/1‑59 (MQ=255) aTCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcataaacagt > 1:25941639‑M2/1‑58 (MQ=255) aTCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAAcagc < 1:32960260/68‑1 (MQ=255) aTCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAAcagc < 1:10007391/68‑1 (MQ=255) cGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAAcagcag < 1:31868539/68‑1 (MQ=255) cGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAAcagcag < 1:34007853/68‑1 (MQ=255) cGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAAcagcag < 1:7430104/68‑1 (MQ=255) cGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAAcagcag < 1:28598956/68‑1 (MQ=255) gCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcatgaacagttta > 1:20233304‑M2/1‑55 (MQ=255) ccTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGc > 1:21169600/1‑68 (MQ=255) ccTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGc > 1:30967677/1‑68 (MQ=255) cTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGc < 1:9046209/67‑1 (MQ=255) tGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAAcatgaacagtttaaca > 1:8674948‑M2/1‑52 (MQ=255) gCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAAt < 1:5368202/68‑1 (MQ=255) gCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAAt < 1:23802982/68‑1 (MQ=255) aaaaTTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAAtt < 1:1908405/67‑1 (MQ=255) aaatattTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCAt < 1:28364175/65‑1 (MQ=255) aaTTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCAt < 1:29700835/68‑1 (MQ=255) aaTTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCAt < 1:24975159/68‑1 (MQ=255) aaTTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCAt < 1:26343512/68‑1 (MQ=255) aaTTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCAt < 1:11156485/68‑1 (MQ=255) aaTTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCAt < 1:20106043/68‑1 (MQ=255) tattTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGc < 1:10528243/68‑1 (MQ=255) tattTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGc < 1:13132391/68‑1 (MQ=255) tttAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGt < 1:16758221/68‑1 (MQ=255) tttAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGt < 1:14854030/68‑1 (MQ=255) tttAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGt < 1:633011/68‑1 (MQ=255) tttAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGt < 1:5631779/68‑1 (MQ=255) ttAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGt > 1:33752066/1‑67 (MQ=255) aaCCAAAATTCATCATTATTTGATGAGATTCGTGCGGTACATGAACAGCAGGCAATTCATTGCGTACt < 1:9294625/68‑1 (MQ=255) aaCCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGt > 1:25258724/1‑65 (MQ=255) ccAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTgg < 1:23260861/68‑1 (MQ=255) ccAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTgg < 1:17580581/68‑1 (MQ=255) ccAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTgg < 1:32416944/68‑1 (MQ=255) ccAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTgg < 1:28782816/68‑1 (MQ=255) ccAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTgg < 1:13855402/68‑1 (MQ=255) ccAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATAGAGTACTgg > 1:2445341/1‑68 (MQ=255) tcatcaTTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTtgatga > 1:33139453/1‑68 (MQ=255) atcatTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAAt < 1:24732143/68‑1 (MQ=255) tcatTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAAt > 1:24052104/1‑67 (MQ=255) attattTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGcc > 1:22234643/1‑68 (MQ=255) attattTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGcc > 1:22349572/1‑68 (MQ=255) ttGATGAGATTCGTGCGGAAcatgaacagtttaacaacacactaccgtcgctcgcaactgattgcgct < 1:1887765‑M2/68‑49 (MQ=255) ttGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGttt > 1:14490601/1‑68 (MQ=255) ttGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGttt > 1:17283459/1‑68 (MQ=255) tgatgaGATTCGTGCGGAAcatgaacagtttaacaacacactaccgtcgctcgcaactgattgcgctt > 1:32058633‑M2/1‑19 (MQ=255) tgatgaGATTCGTGCGGAAcatgaacagtttaacaacacactaccgtcgctcgcaactgattgcgctt > 1:22524589‑M2/1‑19 (MQ=255) atgaGATTCGTGCGGAAcatgaacagtttaacaacacactaccgtcgctcgcaactgattgcgctt < 1:15217171‑M2/66‑50 (MQ=255) tgaGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTa > 1:27704153/1‑67 (MQ=255) gagaTTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTaa > 1:279589/1‑67 (MQ=255) gagaTTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTaa > 1:12575052/1‑67 (MQ=255) ttCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAg > 1:13613866/1‑67 (MQ=255) ttCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAg > 1:20682430/1‑67 (MQ=255) ttCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAg > 1:20497610/1‑67 (MQ=255) ttCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGa < 1:7861840/68‑1 (MQ=255) ttCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGa < 1:8037929/68‑1 (MQ=255) ttCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGa < 1:1412350/68‑1 (MQ=255) ttCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGa < 1:32783274/68‑1 (MQ=255) ttCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGa < 1:17798370/68‑1 (MQ=255) ttCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGa < 1:4965767/68‑1 (MQ=255) atCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGa < 1:30005082/67‑1 (MQ=255) cGTTCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGaca < 1:6832439/68‑1 (MQ=255) cGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAGCCAGaca < 1:12925449/68‑1 (MQ=255) gCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGacaaca < 1:30376366/68‑1 (MQ=255) aaCTTGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGt < 1:33506895/67‑1 (MQ=255) aaCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGt < 1:4736915/67‑1 (MQ=255) aaCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGt < 1:2747067/67‑1 (MQ=255) aaCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGt < 1:411522/67‑1 (MQ=255) aaCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGt < 1:28964506/67‑1 (MQ=255) aaCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGt < 1:8301207/67‑1 (MQ=255) aaCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGt < 1:846544/67‑1 (MQ=255) aaCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGt < 1:1982511/67‑1 (MQ=255) aaCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGt < 1:26706307/67‑1 (MQ=255) aaCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGt < 1:10793962/67‑1 (MQ=255) aaCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGt < 1:21615580/67‑1 (MQ=255) aaCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGt < 1:25698554/67‑1 (MQ=255) aaCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATCCCAGTTTTTAACCAGACAACAAGt < 1:16086338/67‑1 (MQ=255) aCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGtat > 1:6547066/1‑68 (MQ=255) aCATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGta < 1:29245273/67‑1 (MQ=255) | TAGGTTTGTCATCGCCTGCAAAATTATTTAACCAAAATTCATCATTATTTGATGAGATTCGTGCGGAACATGAACAGCAGGCAATTCATTGCGTACTGGTTGATGAATGCCAGTTTTTAACCAGACAACAAGTAT > CP009273/1289140‑1289274 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |