| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1199277 = | 411 (0.990) | 42 (0.120) | 23/94 | NT | 11.4% | coding (554/558 nt) | ymfL | e14 prophage; putative DNA‑binding transcriptional regulator |
| ? | CP009273 | = 1289207 | 305 (0.880) | coding (225/618 nt) | tdk | thymidine kinase/deoxyuridine kinase | |||||
Only 100 of 591 total aligned reads displayed.
GACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGTACCGGGTGGAAAA > CP009273/1199210‑1199343 | gACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGc > 1:1642724/1‑68 (MQ=255) ggtttgtcatcgcctgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCa < 1:34031762‑M1/2‑1 (MQ=255) ggtttgtcatcgcctgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCa < 1:21971591‑M1/2‑1 (MQ=255) aCGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCa > 1:11022872/1‑68 (MQ=255) aCGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCa > 1:21458135/1‑68 (MQ=255) gtttgtcatcgcctgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCAt < 1:10920548‑M1/3‑1 (MQ=255) gtttgtcatcgcctgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCAt < 1:23216624‑M1/3‑1 (MQ=255) cGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCa < 1:17487368/67‑1 (MQ=255) cGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCa < 1:13969730/67‑1 (MQ=255) cGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCAt > 1:12722775/1‑68 (MQ=255) cGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCAt > 1:7555330/1‑68 (MQ=255) cGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCAt > 1:9600470/1‑68 (MQ=255) tttgtcatcgcctgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCa > 1:2994999‑M1/65‑66 (MQ=255) ccGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGa < 1:23399712/67‑1 (MQ=255) tcatcgcctgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCATGAACa < 1:31980313‑M1/8‑1 (MQ=255) tcatcgcctgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCATGAACa < 1:19797615‑M1/8‑1 (MQ=255) gcgAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAATGCATGAACa < 1:15162687/68‑1 (MQ=255) gcgAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCCTCTGGTTGTGGAGAAACTAACGCATGAACa < 1:24802004/68‑1 (MQ=255) catcgcctgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCatgatca < 1:7720090‑M1/8‑4 (MQ=255) catcgcctgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCATGAACa < 1:15596459‑M1/8‑1 (MQ=255) catcgcctgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCATGAACa < 1:9231662‑M1/8‑1 (MQ=255) catcgcctgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCATGAACa < 1:33916978‑M1/8‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:10339312/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:8972443/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:5698893/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:409912/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:32818989/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:31379603/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:11963894/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:29207075/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:28785853/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:1007390/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:22535336/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:20647468/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:20381308/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:14539823/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:19397811/68‑1 (MQ=255) gAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGt < 1:17104100/68‑1 (MQ=255) atcgcctgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCATGAACAGt > 1:17272791‑M1/59‑68 (MQ=255) gtgtGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGtt < 1:25622302/67‑1 (MQ=255) gtgtGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGtt < 1:18053250/67‑1 (MQ=255) gtgCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTa < 1:18701794/67‑1 (MQ=255) gtgCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTa < 1:2964941/67‑1 (MQ=255) cctgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCATGAACAGTTTa < 1:33802198‑M1/13‑1 (MQ=255) tgcaaaattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCATGAACAGTTTaaca > 1:8674948‑M1/53‑68 (MQ=255) gCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTaaca > 1:12404543/1‑68 (MQ=255) gCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTCTGGAGAAACTAACGCATGAACAGTTTaaca > 1:18316354/1‑68 (MQ=255) gCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTaacaac > 1:24271238/1‑67 (MQ=255) gCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTaacaac > 1:18970342/1‑67 (MQ=255) tCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTaacaac < 1:21136955/65‑1 (MQ=255) tCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTaacaac < 1:32149362/65‑1 (MQ=255) tCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTaacaac < 1:15280/65‑1 (MQ=255) tCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTaacaac < 1:7185038/65‑1 (MQ=255) tCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAacaca < 1:11348958/68‑1 (MQ=255) tCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAacaca < 1:26852130/68‑1 (MQ=255) tCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAacac > 1:30236376/1‑67 (MQ=255) aattatttaaccaaaattcatcattatttgatgagattcgtgcggaaCATGAACAGTTTAACAacaca > 1:31110945‑M1/48‑68 (MQ=255) gCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTAcc > 1:27397743/1‑68 (MQ=255) gCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTAcc > 1:10667215/1‑68 (MQ=255) gCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTAcc > 1:28096774/1‑68 (MQ=255) gCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTAc < 1:30392747/67‑1 (MQ=255) gtcgtGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCg > 1:24089786/1‑67 (MQ=255) gtGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGtcgc < 1:30843588/68‑1 (MQ=255) gtGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGtcgc < 1:20953955/68‑1 (MQ=255) gTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGtcgctcgc < 1:21837117/67‑1 (MQ=255) gTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCa < 1:26376149/68‑1 (MQ=255) gTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCa > 1:25890080/1‑68 (MQ=255) tcattatttgatgagattcgtgcggaaCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGa < 1:27090150‑M1/41‑1 (MQ=255) ttCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTgc < 1:22898692/68‑1 (MQ=255) ttCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTg < 1:27901907/67‑1 (MQ=255) ttgatgagattcgtgcggaaCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCt < 1:1887765‑M1/48‑1 (MQ=255) ggTTTTGGAGAAACTAACGCATTAAAATTTTAACAACACTCTACCGTCGCTCGCAACTGATTGCGCtt < 1:20144640/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:24668388/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:2220398/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:521766/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:4697564/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:8215725/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:847698/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:34258472/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:23726413/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:33441583/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:28519301/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:11504877/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:26610870/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:27589662/68‑1 (MQ=255) ggTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt < 1:28291649/68‑1 (MQ=255) gTTGTGGAGAAACTAACGCATGAACAGTTTAACAACCCACTACCGTCGCTCGCAACTGATTGCGCtt > 1:8882659/1‑67 (MQ=255) gTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCtt > 1:4459651/1‑67 (MQ=255) ttGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTc < 1:14247774/67‑1 (MQ=255) ttGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTc < 1:17722988/67‑1 (MQ=255) tgtgGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTcc < 1:6121085/67‑1 (MQ=255) tgtgGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTcc < 1:6502277/67‑1 (MQ=255) tgtgGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCt < 1:15972692/68‑1 (MQ=255) gattcgtgcggaaCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGt > 1:24483604‑M1/14‑67 (MQ=255) gagaAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGTa > 1:13184543/1‑67 (MQ=255) gagaAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGTa > 1:3536318/1‑67 (MQ=255) aaCTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGTACCgg < 1:19948398/67‑1 (MQ=255) gcggaaCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGTACCGGGTg < 1:33209472‑M1/62‑1 (MQ=255) aCGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGTACCGGGTGGaa > 1:13724055/1‑68 (MQ=255) CATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGTACCGGGTGGaaaa < 1:25114309‑M1/67‑1 (MQ=255) | GACGCCCGCGAGTGTGCAGCTCCGGGCGTCGTGGCGTCGATTGCTTCTGGTTGTGGAGAAACTAACGCATGAACAGTTTAACAACACACTACCGTCGCTCGCAACTGATTGCGCTTCCTGTACCGGGTGGAAAA > CP009273/1199210‑1199343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |