| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1314847 = | 188 (0.450) | 9 (0.030) | 8/96 | NT | 5.6% | coding (795/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase |
| ? | CP009273 | 1314933 = | 140 (0.390) | coding (709/1596 nt) | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase | |||||
AGCATGAAAATTCGCGGTGAGCACCCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1314921‑1314847‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccgCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCTTGTT > CP009273/1314933‑1314998 AGCATGAAAATTCGCGGTGAGCACCCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGC > 1:29151188/1‑68 ATGAAAATTCGCGGTGAGCACCCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGC < 1:11887805/68‑1 ATGAAAATTCGCGGTGAGCACCCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGC > 1:15118225/1‑68 ATGAAAATTCGCGGTGAGCACCCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGC < 1:17618230/68‑1 ATGAAAATTCGCGGTGAGCACCCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGC < 1:18368801/68‑1 TGAAAATTCGCGGTGAGCACCCGAACGAGATCTCCTGGGCAGCAACCGCGCTACTGGAAAACGCAGCG < 1:25293072/68‑1 TGAAAATTCGCGGTGAGCACCCGAACGAGATCGCCGGGGAATCAACCGCGCTACTGGAAAACGCAGCG < 1:32359392/68‑1 AAAATTCGCGGTGAGCACCCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGCGCC > 1:28828478/1‑68 AAATTCGCGGTGAGCACCCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGCGCC < 1:20534716/67‑1 AAATTCGCGGTGAGCACCCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGCGCC < 1:33834670/67‑1 AAATTCGCGGTGAGCACCCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGCGCC < 1:15609885/67‑1 AAATTCGCGGTGAGCACCCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGCGCC < 1:19994018/67‑1 GCGGTGAGCACCCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGCGCCGCCGCCA < 1:16974572/68‑1 ACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGCGCCGCCGCCAGTTGTTCCGGCTTCA > 1:33494544/1‑68 GAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGCGCCGCCGCCAGTTGTTCCGGCTTCA > 1:12198457/1‑66 GATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGCGCCGCCGCCAGTTGTTCCGGCTTCAGCTC > 1:9490172/1‑68 CCGGGGCAGCAACCGCGCTACTGGAAAACGCAGCGCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCAC > 1:27904671/1‑68 GCAGCAACCGCGCTACTGGAAAACGCAGCGCCGTCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACC > 1:2804176/1‑68 ACCGCGCTACTGGAAAACGCAGCGCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACC > 1:13794927/1‑65 ACCGCGCTACTGGAAAACGCAGCGCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACC > 1:7270941/1‑65 CGCTACTGGAAAACGCAGCGCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAA > 1:18857667/1‑68 GCAGCGCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTT > 1:32510301/1‑68 CAGCGCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCCCGCCCCACCGCTGAAAACAGCTGGTGGCTT > 1:20973969/1‑67 CAGCGCCGCCGCCAGTTGTGCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTT < 1:21986737/68‑1 AGCGCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTT > 1:10084186/1‑66 AGCGCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTT > 1:15830826/1‑66 GCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAATCAGCTGGTGGCTTTCTTG > 1:8794515/1‑68 GCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACCGCTGGTGGCTTTCTTG > 1:11171665/1‑68 GCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCTTG < 1:10092696/68‑1 GCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCTTG > 1:8201747/1‑68 GCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCTTG > 1:6636846/1‑68 GCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCTTG > 1:15467067/1‑68 GCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCTTG > 1:16652479/1‑68 GCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCTTG < 1:20086177/68‑1 GCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCTTG > 1:21084622/1‑68 GCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCT < 1:33741534/66‑1 GCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCT < 1:15000652/66‑1 GCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCAACACCGCTGAAAACAGCTGGGGGCTTTCTTG > 1:33462797/1‑68 GCCGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGAACCACCGCTGAAAACAGCGGGTGGCTTTCTTG > 1:7566575/1‑68 CGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCTTGTT > 1:7413175/1‑68 CGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCTTGTT < 1:28114870/68‑1 CGCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCTTGTT < 1:27521302/68‑1 AGCATGAAAATTCGCGGTGAGCACCCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1314921‑1314847‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccgCCGCCAGTTGTTCCGGCTTCAGCTCGCCACGCACCACCGCTGAAAACAGCTGGTGGCTTTCTTGTT > CP009273/1314933‑1314998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |