| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1783272 | 269 (0.650) | 14 (0.040) | 5/98 | NT | 5.2% | coding (581/1047 nt) | aroH | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
| ? | CP009273 | = 1783285 | 273 (0.750) | coding (594/1047 nt) | aroH | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible | |||||
TCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1783200‑1783272‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggatAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTGCC < CP009273/1783285‑1783219 TCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATAC > 1:7450069/1‑67TCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATAC > 1:14884652/1‑67TCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATAC > 1:3848032/1‑67 CCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGC > 1:17212395/1‑68 CCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGC > 1:32231381/1‑68 CCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGC < 1:21344985/68‑1 CCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGC > 1:33090638/1‑68 CCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGC < 1:19675108/68‑1 CCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGC > 1:357081/1‑68 CCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGC > 1:4005662/1‑68 CCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGC > 1:4207332/1‑68 CCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGC > 1:4705171/1‑68 CACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTAAAAAATGGTACCGATCGCAATACGCG > 1:23833572/1‑68 ACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGG < 1:23437621/68‑1 ACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACAGATGGCAATACGCGG > 1:6996269/1‑68 ACCGCGAAATGGCGTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGG < 1:25600936/68‑1 CCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGA < 1:4129324/68‑1 CCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGA < 1:11476367/68‑1 CCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGA < 1:13262808/68‑1 CCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGA < 1:15825697/68‑1 CGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGAT > 1:20403386/1‑68 CGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGAT > 1:29477930/1‑68 CGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGAT > 1:15334168/1‑68 TCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATAGCATGCACAGCGTTCCGCGg > 1:347894/1‑67 TCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATAGCATCCACAGCAATCCGCGT > 1:30102247/1‑68 CCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATAGCATCCACCGCAATCCGCGTA > 1:31823056/1‑68 GTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATAGCATCCACAGCAATCCGCGTATTG > 1:26367604/1‑68 CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATAGCGTCCACAGCAATCCGCGTTTTGCC > 1:5836908/1‑68 CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATAGCATCCACCGCAATCCGCGTATTGCC > 1:9479606/1‑68 CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATAGCATCCACAGCAATCCGCGTATTGCC > 1:26489158/1‑68 CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATAGCATCCACAGCAATCCGCGTATTGCC > 1:8177744/1‑68 CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATAGCATCCACAGCAATCCGCGTATTGCC > 1:15027204/1‑68 CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATAGCATCCACAGCAATCCGCGTATTGCC > 1:25565952/1‑68 CCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGAGAGCAACCCCAGCAATCCGCGGATTGCC > 1:25383927/1‑68 GGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATAGCATCCACAGCAATCCGCGTATTGCCA > 1:1085141/1‑67 GGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGATAGCATCCACAGCAATCCGCGTATTGCCA > 1:4842194/1‑67 GGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGAAAGCATCCACAGCAATCCGCGTATTGCCA > 1:8709458/1‑67 GCGGATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGA > 1:6864134/1‑68 GCGGATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAG < 1:25155908/67‑1 GCGGATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAG < 1:26496191/67‑1 GCGGATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAG < 1:22243924/67‑1 CGGATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAG > 1:15083949/1‑68 CGGATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAG > 1:34506110/1‑68 CGGATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAG > 1:646350/1‑68 GGATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGT < 1:12891224/68‑1 GGATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGT < 1:18469551/68‑1 GGATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGT < 1:6683187/68‑1 GGATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAG < 1:16220646/67‑1 GGATAGCATCCACAGCAATCAGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGT < 1:5330816/68‑1 ATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTG < 1:16004624/67‑1 ATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTG < 1:10792176/67‑1 ATAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTG < 1:2686245/67‑1 TAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTGCC > 1:4402690/1‑68 TAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTGCC > 1:16824677/1‑68 TAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTGCC > 1:19100338/1‑68 TAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTGCC > 1:21116177/1‑68 TAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTGCC > 1:22615159/1‑68 TAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTGCC > 1:23293707/1‑68 TAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTGCC > 1:6999311/1‑68 TAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTGCC > 1:2367130/1‑68 TAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTGCC > 1:1044627/1‑68 TAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTGC < 1:3075956/67‑1 TCCACCGCGAAATGGCTTCGGCACTCTCCTGTCCGGTAGGTTTTAAAAATGGTACCGATGGCAATACGCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1783200‑1783272‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggatAGCATCCACAGCAATCCGCGTATTGCCATCGGTACCATTTTTAAAACCTACCGGACAGGAGAGTGCC < CP009273/1783285‑1783219 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |