BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1793032 =	137 (0.330)	8 (0.020)	5/96	NT	6.3%	coding (168/984 nt)	pheS	phenylalanine tRNA synthetase, alpha subunit
*	?	CP009273	1793061 =	120 (0.340)	8 (0.020)	5/96	NT	6.3%	coding (139/984 nt)	pheS	phenylalanine tRNA synthetase, alpha subunit

Only 100 of 110 total aligned reads displayed.

TTGGGTAAAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCGGCAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1793106‑1793032

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT  >  CP009273/1793061‑1793126

TTGGGTAAAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCC                                                                           >  1:32341279/1‑68

 TGGGTAAAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCG                                                                          >  1:8865947/1‑68

 TGGGTAAAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCG                                                                          >  1:31093476/1‑68

 TGGGTAAAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCG                                                                          <  1:30213887/68‑1

   GGTAAAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCGGC                                                                        >  1:28892946/1‑68

     TAAAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCGGCA                                                                       <  1:20510658/67‑1

      AAAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCGGCAGC                                                                     <  1:14073383/68‑1

      AAAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCGGCAGC                                                                     <  1:10298651/68‑1

      AAAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCGGCAG                                                                      <  1:17295909/67‑1

       AAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCGGCAGCT                                                                    <  1:27663086/68‑1

       AAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCGGCAGCT                                                                    <  1:21161074/68‑1

       AAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCGGCAGCT                                                                    <  1:102094/68‑1

                 CTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGACGAGCGTCCGGCAGCTCACGCAGGGT                                                          <  1:19261065/68‑1

                 CTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCGGCAGCTCACGCAGGGT                                                          <  1:34443705/68‑1

                 CTTAACCCTTCAGATGACCACCCTGCGGGAGCTGCCGCCAGAAGAGCGTCCGGCAGCTCACGCAGGGT                                                          <  1:19219460/68‑1

                           CAGATGACGCCCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCGGCAGCTCACGCAGGGTCGTCATCTGA                                                <  1:34250028/68‑1

                               tcACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGCCCGGCAGCTCACGCAGGGTCGTCATCTGAAGG                                             <  1:23044627/65‑1

                               TGACGACCCTGCGGGCGCTGCCGCCAGAAGAGCGCCCGGCAGCTCACGCAGGGTCGTCATCTGAAGGG                                            <  1:2959111/68‑1

                                 ACGACCCTGCGTGAGCCGCCGCCAGAACAGCGGCCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGT                                           <  1:10087961/67‑1

                                                    CGCCAGAAGAGCGTCCGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCA                       <  1:21418697/68‑1

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTTAGTGCCCTTTTTTACCCAAATATTCGACCCGg         >  1:22682569/1‑66

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         >  1:5163404/1‑67

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         >  1:10203726/1‑67

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         >  1:27392078/1‑67

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         >  1:28753706/1‑67

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         >  1:4189370/1‑67

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         >  1:25550381/1‑67

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         >  1:24075990/1‑67

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         <  1:4750441/67‑1

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         >  1:480466/1‑67

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         >  1:22191935/1‑67

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         >  1:13963897/1‑67

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         >  1:16553989/1‑67

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         >  1:18612712/1‑67

                                                                   CGGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGC         >  1:14696033/1‑67

                                                                    GGCATCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCA        <  1:10868603/67‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCAC       <  1:10003980/68‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCAC       <  1:7263483/68‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCAC       <  1:34505138/68‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCAC       <  1:16108150/68‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCAC       <  1:16510151/68‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCAC       <  1:23736342/68‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCAC       <  1:23332685/68‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCAC       <  1:12928657/68‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCAC       <  1:22002885/68‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCAC       <  1:6342867/68‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCAC       <  1:14104984/68‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCAC       <  1:30953428/68‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCA        <  1:20161384/67‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCA        <  1:18923621/67‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCA        <  1:14309133/67‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCA        <  1:27224642/67‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCA        <  1:26204839/67‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCA        <  1:21813143/67‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCA        <  1:32342257/67‑1

                                                                    GGCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCA        <  1:3256430/67‑1

                                                                     GCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGCCGCGGACA      >  1:173955/1‑68

                                                                     GCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACA      >  1:1681328/1‑68

                                                                     GCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACA      >  1:6082127/1‑68

                                                                     GCAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACA      >  1:15507403/1‑68

                                                                      CAGCTCACGCGGGGTGTTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACA      <  1:16246522/67‑1

                                                                      CAGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACA      <  1:8498694/67‑1

                                                                      CAGCTCACGCAGGGTCGTAATCTTAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACA      <  1:16334854/67‑1

                                                                       AGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACAT     <  1:33753073/67‑1

                                                                       AGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACAT     <  1:22469449/67‑1

                                                                       AGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACAT     <  1:11270126/67‑1

                                                                       AGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACAT     <  1:27737047/67‑1

                                                                       AGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACAT     <  1:1332458/67‑1

                                                                       AGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACAT     <  1:22951040/67‑1

                                                                       AGCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACAT     <  1:20163168/67‑1

                                                                        GCTCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTA   >  1:21023110/1‑68

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGGCCTTTTTTACCCAAATATTCGCCGCGCACATTAT  <  1:10269579/67‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCTCATTAT  <  1:10965549/67‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT  <  1:4140495/67‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT  <  1:26096961/67‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT  <  1:4836374/67‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT  <  1:7916615/67‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT  <  1:10581133/67‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT  <  1:30467455/67‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT  <  1:31439861/67‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT  <  1:29467024/67‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT  <  1:27611872/67‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT  <  1:25829487/67‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT  <  1:21607965/67‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTA   <  1:28631070/66‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTA   <  1:12992716/66‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTA   <  1:17588149/66‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTA   <  1:18644156/66‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATT    <  1:16087823/65‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATT    <  1:17000966/65‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATT    <  1:843901/65‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATT    <  1:7960310/65‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATT    <  1:19066967/65‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATT    <  1:19522498/65‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATT    <  1:13879074/65‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATT    <  1:23137881/65‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATT    <  1:23713780/65‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATT    <  1:3786928/65‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATT    <  1:30455242/65‑1

                                                                          TCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATAATCGACGCGCACATT    <  1:26592514/65‑1

TTGGGTAAAAAAGGGCACTTAACCCTTCAGATGACGACCCTGCGTGAGCTGCCGCCAGAAGAGCGTCCGGCAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1793106‑1793032

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcagctCACGCAGGGTCGTCATCTGAAGGGTTAAGTGCCCTTTTTTACCCAAATATTCGACGCGCACATTAT  >  CP009273/1793061‑1793126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.